Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_1300
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Entry
F542_1300 CDS
T03017
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F542_1300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btre03019
]
F542_1300
Messenger RNA biogenesis [BR:
btre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F542_1300
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
DUF8005
Motif
Other DBs
NCBI-ProteinID:
AHG80848
UniProt:
A0A4V7I742
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All DBs
Position
complement(134651..135244)
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AA seq
197 aa
AA seq
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MIDFDGYRPNVGIVICNKQGQVLWAKRFGQNSWQFPQGGIHEGENIESAMYRELYEEVGL
SKKDVRLLWASKYWLKYKLPKRLIRHDAPSGQPVCIGQKQRWFLLQLTGKESEINLGTTK
TPEFDGWRWVSFWYPVRQVVSFKRDVYRKVMKEFAQVLMNESKRAELERGREERGEKRPF
RNEKYDGQKARFHKGKK
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatttcgatggttaccgcccaaatgttggtatcgtcatctgtaataaacaaggg
caagttctctgggcaaaacggtttggacaaaattcgtggcaatttccacaaggaggaatt
cacgaaggtgaaaacattgaatctgcaatgtaccgtgagctttatgaagaagttggttta
tctaaaaaagatgtgcgcttactttgggcatcgaagtattggctaaaatacaaattgcca
aaacgcttaattcgtcatgacgcccctagtgggcagccggtctgtatcgggcaaaaacag
cgttggtttctgctacagctgacaggcaaagagagcgaaattaatctcggcacaaccaaa
acaccagaatttgatggctggcgctgggtgagtttttggtatcctgtacgccaagtggtt
tcatttaaacgagatgtctatcgcaaagtcatgaaagagtttgctcaagtgctaatgaat
gaaagcaaacgcgccgaactagagagagggcgggaagaacgtggtgaaaaacggcctttt
cgcaatgaaaaatatgacggacaaaaagcccgttttcataaggggaaaaaatga
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