Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_15050
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Entry
F542_15050 CDS
T03017
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03420
Nucleotide excision repair
btre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F542_15050
03430 Mismatch repair
F542_15050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_15050
Enzymes [BR:
btre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F542_15050
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F542_15050
MMR (mismatch excision repair)
Other MMR factors
F542_15050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
DUF7432
SpoIIAA-like
DUF4391
Motif
Other DBs
NCBI-ProteinID:
AHG82221
LinkDB
All DBs
Position
1634123..1636306
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AA seq
727 aa
AA seq
DB search
MDFSLLLDGLNDKQREAVAAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAV
TFTNKAAAEMRQRIESTLMQAGNHRLFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDT
EDQLRLLKRLMKLHNIDEKHFPPKQVAWFINAQKDKGLRAKDIVLEQGDHNGRELVKLYQ
IYQDACDRAGLLDFAELLIRAYELFKNKPPILQRYQQRFQQILIDEFQDTNNIQYDLIRL
LAGNSGHVMIVGDDDQSIYGWRGAQVENIQRFLNDYQNAQTIRLEQNYRSTGHILNSANA
LIANNDNRLGKNLWTDSGDGDPVDIYCAFNELDEARFVASQIKQWKEDHGDLNECAVLYR
SNSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVVNTPP
RSIGDRTLDVLRQLTRSRQITLWQAIQVAVKEEMLSGRAANALLRFVDLINALDNETEQM
PLFEQTDFVIKNSGLYEMYKQEKGEKGEVRIENLEELVSATRDFIKTDEADEMSDLTAFL
THASLEAGETQASPHQEYVELMTLHSAKGLEFPRVFIVGVEEGLFPSGMSFDEGRLQEER
RLAYVGITRAKKKLTISYAELRRLYGKEERHLPSRFIAELPEEHIREVRLRGNINRPAAF
VNSKAKSTACIDNTNEWKMGQKVLHEKFGQGTVINVEGSGEQTRLQIAFVANGIKWLIAK
MAKLERN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggatttctctctattactcgatggcttaaatgataaacaacgtgaagccgtagccgct
ccgctcggcaattatttggtactcgcaggggcaggtagcggtaaaacgcgtgtgctcact
catcgtattgcttggcttatcggtgtggagaatgtccctgaaagtaatatccttgctgtt
acctttacaaataaagccgcagcagaaatgcgtcagcgtattgaaagtacccttatgcaa
gcaggtaatcatcgcctatttggtatgtgggttggcaccttccatagcattgccaaccgc
ttattacgttctcactatctcgatgccgatctgccccaagatttccaaattatggatacg
gaagatcagcttcgtttgctcaaacgcttgatgaaactgcataacattgatgaaaaacat
tttccacctaaacaggtggcgtggtttattaatgcccaaaaagataaaggtttgcgtgcc
aaagatattgtgctggaacaaggcgaccataatgggcgagaattggtgaaactgtatcaa
atttatcaagatgcctgcgaccgtgctggcttgcttgattttgccgagttattaattcga
gcctatgagctattcaaaaataaaccgccgattttgcaacgttatcaacaacgctttcag
caaattttgatcgatgaattccaagatactaacaacattcaatacgatttaatccgatta
ctggcaggaaatagcggccatgtgatgattgtgggcgatgatgatcaatctatctacggc
tggcgaggggcacaagtggaaaatatccaacgttttttgaatgattatcaaaatgcccaa
actatccgccttgagcaaaactatcgttctacagggcatattcttaattcagccaatgcc
ttaattgccaataacgataaccgtttaggtaaaaacctttggacagatagtggcgatggt
gaccctgtcgatatttattgtgcatttaatgaattagatgaagctcgttttgttgcctca
caaattaaacagtggaaagaagaccatggcgatttaaacgaatgtgccgtgctgtatcgg
agtaatagccaatctcgtgtgattgaagaagcgcttattcaagccaacattccttaccgt
atttatggcggtatgcgattctttgaacgccaagaaattaaagatgcccttgcctattta
cgcttaattgccaatcgccaagatgatgccgcatttgagcgtgttgtgaataccccacca
cgcagcattggcgatcgtacccttgatgtgctgcgtcaattaactcgtagccgtcagatc
accctttggcaagcaatccaagtagcagtaaaagaagaaatgctatcaggacgtgctgca
aatgcactactccgttttgtcgatttaatcaatgcgttggataacgaaaccgagcagatg
cccctattcgagcaaaccgattttgtgattaaaaattccggtttgtatgagatgtataag
caagaaaaaggcgaaaaaggtgaagtacgcattgaaaacttagaagagttagtcagtgca
acccgtgattttatcaaaactgatgaagccgatgaaatgagcgatctcactgcattttta
acccacgcttcccttgaagcaggtgaaacacaggcttcaccacatcaggaatatgtcgaa
ttaatgacattgcactcagcaaaaggattggagtttcctcgtgtatttatcgtaggggtg
gaagaaggcttattcccgagtggaatgagctttgatgaaggtagattacaagaagagcgt
cgccttgcctatgtagggattactcgagcgaagaaaaaactcacgattagctatgccgaa
ctacgtcgtttatacggcaaggaagaacgccatttaccttctcggtttattgccgaacta
cctgaagaacatattcgtgaagtacggctacgaggaaatatcaaccgccctgcggctttt
gtaaattccaaagcaaaatcaaccgcttgtattgataatacgaatgaatggaaaatggga
caaaaagtacttcacgaaaaatttgggcaaggtacggttattaatgtggaaggcagcggc
gaacaaacccgcttacaaattgcctttgtcgccaatggcatcaaatggctaattgcgaaa
atggcaaaattggaaagaaattag
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