Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_18320
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Entry
F542_18320 CDS
T03017
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F542_18320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btre03021
]
F542_18320
03019 Messenger RNA biogenesis [BR:
btre03019
]
F542_18320
Transcription machinery [BR:
btre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F542_18320
Messenger RNA biogenesis [BR:
btre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F542_18320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
DUF3086
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AHG82546
UniProt:
A0A4V7IC01
LinkDB
All DBs
Position
complement(2013837..2015189)
Genome browser
AA seq
450 aa
AA seq
DB search
MQNAQNRCILRHLNSGKYLSEFQSNNISIFMHLTELKNTPVSDLVAIGEGQMGLENLARL
RKQDIIFAILKHHAKSGEDIFGGGVLEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRF
NLQTGDSIEGKIRPPKEGERYFALLKVDEVNNDKPEVSRSKILFENLTPLHANSRLRMER
GNGSTEDLTARIVDLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNYPECELIVLLI
DERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDSITR
LARAYNTVTPASGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDE
VIFEEFKGTGNMELHLSRKIAERRVFPAIEFNRSGTRKDDLLMSPEEHRNAWMLRKVINP
MDEVAAMEWLIDKLSVAKTNAEFFEIMKRS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaatgcgcaaaatcgctgtattcttcgccatctcaattcaggtaaatacctgtca
gaattccaatcaaataacatttctatatttatgcatcttacagaattaaaaaatacaccg
gtttctgatcttgttgcgatcggagaggggcaaatggggttagaaaacctagctcgtttg
cgtaaacaagatattatttttgcaattttaaaacaccatgctaaaagtggtgaagatatc
tttggcggaggggttttagaaattttgccagatggctttggctttttgcgttcagcagat
agttcttatttagccgggccggatgatatttatgtgagcccaagccaaattcgccgtttt
aacttgcaaacaggggatagcattgaaggtaaaattcgcccaccaaaagaaggtgaacgc
tattttgctctgcttaaagttgatgaggtgaataatgataaacctgaagtttctcgcagt
aaaatcctgtttgaaaacttaactccactacacgcaaattcccgtttgcgaatggaacgt
ggtaatggttcaacagaagatttaactgctcgtatcgtggatttagctgcgccaatcggt
aaagggcagcgtggtttgattgttgcaccaccgaaagcaggtaaaacagttttactacaa
aatatcgctcaaagcattacgcacaactatccagagtgtgaattgatcgtgttattgatt
gatgaacgccctgaagaggtaacggaaatgcagcgttcagtaaaaggcgaagtgattgca
tcaacctttgatgaaccagcaactcgtcacgtgcaagtggcagaaatggtaattgaaaaa
gcaaaacgtttggttgagcataaaaaagatgtggtaattttattagactctattacacgt
ttagcacgtgcttacaatactgttacccccgcttcaggtaaaattctttcaggtggtgtg
gatgccaatgcgctacatcgtccaaaacgtttctttggtgccgcacgtaacgttgaagaa
ggtggtagcttaaccattatcgcgacagctcttgtggacactggttccaaaatggatgaa
gtgattttcgaggagtttaaaggaacggggaatatggagcttcacctttctcgcaaaatt
gctgagcgtcgtgtgttccctgcaattgaatttaatcgctcgggtacacgtaaagatgat
ttattaatgtcgccggaagaacatcgaaatgcgtggatgctgcgtaaggtgatcaaccct
atggacgaagtggcggcgatggaatggcttattgataaattaagcgtagcaaaaactaac
gcagaattttttgagatcatgaagcgttcgtaa
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