Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_19320
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Entry
F542_19320 CDS
T03017
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F542_19320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_19320
Enzymes [BR:
btre01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F542_19320
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F542_19320
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F542_19320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
HscB_4_cys
NFACT_N
Zn_Tnp_IS91
HypA
Motif
Other DBs
NCBI-ProteinID:
AHG82643
UniProt:
A0A4V7IC75
LinkDB
All DBs
Position
complement(2122109..2122933)
Genome browser
AA seq
274 aa
AA seq
DB search
MPELPEVETSVRGVTPYLVGQTIKQVVIRQPKLRWQVSPELAAMQGATITHIDRRAKYLI
IRTDKGDIIVHLGMSGSLGILTQQNDLGAGKHDHIDLVTQNGTILRYNDPRKFGAWLWAK
NAEELEIIQRLGVEPLSDNFDGEHLYQLSRNKTVAVKNFIMNNAVVVGVGNIYASESLFM
AGIHPELAAQNLTKKQCARLATVIKEVLTKSIIQGGTTLKDFIQPDGKPGYFAQVLQVYG
RKGEECRDCGSEIQAKVIGQRNSFFCPKCQKLPR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgaaacgagtgtccgtggtgtcaccccatatcttgttggg
cagacaattaagcaggtggtgattcgccagcctaagctacgttggcaagtcagccctgaa
ttagctgcaatgcagggggcaacaattacccatattgatcggcgcgcaaaatacttaatt
attcgcaccgataagggagatatcattgtgcatttaggtatgtcaggatcgctaggcatt
ttaacgcagcaaaacgatctaggcgcagggaaacatgatcatattgatctggttacccaa
aatggcactatcttgcgctataacgatccaagaaaatttggggcttggctttgggcgaaa
aacgcagaagagttagagattattcagcgattgggggttgagccgctttccgataacttt
gatggcgagcatctctatcaacttagtcgcaataaaacagtcgcagttaaaaatttcatt
atgaataatgcggtggttgttggtgtgggaaatatctatgccagcgagagtttatttatg
gcagggattcaccctgaacttgctgcgcaaaatcttactaaaaaacagtgtgcgaggttg
gctactgtaatcaaagaagtactgacaaaatctattattcaaggcggtacaacgctaaaa
gattttatccaacctgatggcaaaccgggctattttgcccaagtcttgcaagtgtatgga
cgaaaaggtgaggaatgccgagattgtggtagtgaaattcaggctaaagttatcgggcaa
cggaatagctttttctgccctaaatgccaaaagctacctcgctga
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