Bibersteinia trehalosi USDA-ARS-USMARC-188: F542_7170
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Entry
F542_7170 CDS
T03017
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
btre
Bibersteinia trehalosi USDA-ARS-USMARC-188
Pathway
btre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F542_7170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btre03019
]
F542_7170
03400 DNA repair and recombination proteins [BR:
btre03400
]
F542_7170
Enzymes [BR:
btre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F542_7170
Messenger RNA biogenesis [BR:
btre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F542_7170
DNA repair and recombination proteins [BR:
btre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F542_7170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
HEM4
zf-CXXC
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHG81435
UniProt:
A0A4V7I8T1
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Position
731686..733509
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AA seq
607 aa
AA seq
DB search
MAISTPSPLAKAKEVLHNVFGYQSFRQGQEEVIQAILSGQDCLVIMTTGGGKSLCYQVPA
LCLSGLTIVISPLISLMKDQVDQLLTNGVEAGYLNSTQTLEEQQHVEQKAIAGQLKLLYL
SPEKVMGSSFYHFISLCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRKTFPNIPLVALT
ATADPTTRADIIQHLALNQPHTYLGSFDRPNIRYTVQEKFKPFDQLLKFIQTQQGKSGIV
YCNSRKKVEDITAKLAARRISVMGYHAGMSMQERETVQNAFQRDNIQIVVATVAFGMGIN
KSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAMLLYDPADYGWLHKVLLEKPESEQR
QIEQHKLQAIGAFAESQTCRRLVLLNYFGESRQKNCGNCDICLSPPKKYDGLVDAQKVMS
VIYRTGQRFGLHHVIAVLRGLNNQKVRDFQHETLSVFGIGKEKSQEHWISVTRQLIHLGF
VRQNITNHSALQLTEQARPILRAEQGLELAMPRLGFSATAYVQKQVSRRNYDKDLFARLR
FLRKQIADKENIPPFVVFNDATLQEMAEFLPTDENALLNINGVGERKLDRFGELFLNLIR
EHLHNRT
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcaatctctaccccttctcctcttgcaaaagccaaagaggttctacataacgttttt
ggttatcagtctttccgacaaggtcaggaagaagtgattcaggcaattctgtcaggacag
gattgccttgtcattatgactactggtggtggaaaatcgttgtgttatcaagtgcccgcc
ttatgtctttctggcttaactatcgtgatttcgcctttgatctcgttgatgaaagatcaa
gttgatcagctattgacgaatggagttgaggcaggttatctcaattctacgcaaacctta
gaagagcagcagcacgttgaacagaaagctatcgcaggacagctcaaactgctttatctc
tctcctgaaaaagtgatgggcagtagcttttatcactttatctcattatgtaagattagc
cttatcgctgttgatgaagcgcactgtgtgtctcagtgggggcatgactttcgccctgaa
tatactttacttggtggtttgcgaaaaactttcccaaatataccgcttgttgcgcttaca
gcaactgcagatcctactacccgagcggatattattcagcatttagctctcaatcagcca
catacttatttgggtagctttgaccgtccaaatattcgctatacggtgcaagaaaaattt
aaaccgtttgatcagttgcttaaattcattcagacacagcaaggtaaaagtggcattgtg
tactgcaatagtcgtaaaaaagtggaagatatcactgctaaactcgctgcacgtagaatt
tctgtgatgggctatcatgctgggatgagtatgcaagaacgagagacggtacaaaatgct
tttcaacgtgacaatattcaaattgtggtcgcaaccgttgctttcggtatggggattaat
aaatcgaatgtgcgatttgtggtgcattttgatttgccaagaagcattgaatcttactat
caggaaacgggtagagcaggacgtgatgatttaccttcagaggcgatgctactttatgat
cctgctgattatggctggctacataaggtattattggaaaaaccagagagtgaacaacgt
caaattgagcagcataaattacaagcaataggcgcatttgcagagtctcaaacttgtcgc
cgattagtgctgcttaactattttggggaatcgcgtcagaaaaattgtggcaattgcgat
atttgcctttcgccacctaaaaagtatgatggtctagttgatgcacagaaagtgatgtcg
gtgatttatcgaacagggcaacgcttcggtttacatcatgttattgctgtcttgcgaggt
ttaaataatcagaaagtaagggatttccagcatgagacgctttcggttttcggcattggc
aaagagaaatcgcaagagcattggataagtgttactcgtcagcttatccatttaggattt
gttcggcaaaatatcacgaaccactcagcattacagctcacagaacaggcccgccctata
ttacgtgcagagcaggggctggaattggcgatgccaagattaggtttttctgcaactgca
tatgtgcaaaaacaggttagtcgacgtaattatgataaggatctatttgctcgtttgcgt
tttttgcgcaagcaaattgcagataaagagaatattccaccattcgtggtatttaatgat
gcaactttacaagaaatggcagagtttttaccaacggatgaaaacgcactgttgaatatt
aacggggtgggagaacgtaaattggatcgttttggtgagctatttttaaatttaattcga
gaacacttacataatcgaacgtaa
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