Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_10100
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Entry
F543_10100 CDS
T03018
Name
(GenBank) Cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
btrh
Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F543_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrh03019
]
F543_10100
03009 Ribosome biogenesis [BR:
btrh03009
]
F543_10100
Enzymes [BR:
btrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F543_10100
Messenger RNA biogenesis [BR:
btrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F543_10100
Ribosome biogenesis [BR:
btrh03009
]
Prokaryotic type
rRNA helicases
F543_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Con-6
Mn_catalase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHG83874
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All DBs
Position
979795..981576
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AA seq
593 aa
AA seq
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MTTETMTFADLGLPQTILDAVNDMGFVNPSPIQQACIPHLLAGRDVLGMAQTGSGKTAAF
SLPILAQIQVSERHPQMLVMAPTRELAIQVADACEQFTKNMKGIRIATIYGGQSYGLQIR
DLKAGAQVVVGTPGRILDHIRKGTLNLSALKAIVLDEADEMLRMGFIEDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSFWRVEGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTVDITELLERNGYRAAALNGDMTQQAREHALERLRSGRLDIVV
ATDVAARGIDIERISLVVNYDITLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI
EHLIKKPIDEVSIPNHEMLMAKRREKFKARISQQLEHHDLEQYRELLEDLFTADQDHEEL
AAAMMMMLTEKQKLILPPDPEIKRSRERGGRENPRSLERRGGREHRENNGVAMDLYRIEL
GREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPKHLVQHFANKARLLS
KPMQMSLIGAVENGGGERRGNPRKGSRNDRQERGFKERKGGFKEKRFNERGRR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgaaactatgactttcgccgacttaggcttaccccaaaccattcttgatgct
gtaaatgacatgggctttgttaatccatctcccattcaacaagcctgtattccacactta
cttgcaggtcgtgatgtattaggtatggcacaaacaggcagtggtaaaaccgccgcattc
tctttaccgattcttgcacagattcaagtctctgaacgccacccacaaatgttagtgatg
gctccaacccgtgaattagcgattcaagttgctgatgcttgtgagcaatttaccaaaaat
atgaaaggcattcgtattgcaactatttatggtgggcaatcttacggcttacagattcgt
gatttaaaagcaggcgcacaagtggtggtcgggacaccgggacgtatcttggaccatatc
cgtaaaggtacgctaaacctttctgcattaaaagcgattgtgctcgatgaggcagacgaa
atgttgcgtatgggctttattgaagatgtggaaaccgtgatggcagaattaccagaagat
caccaaacagctctcttctctgccacaatgcctgagcctattcgccgtattacacgccgt
tttatgaaagatccgcaagaagttaaaattcaggcaactcaacgttcagcacctgacatc
acccaaagtttttggcgtgtagaaggtttccgtaaaaatgatgccttattgcgtttctta
gaagttgaagaatttgacgctgcaattatctttactcgtaccaaaacaggcacggtagat
attaccgaattgttagaacgcaatggctaccgtgcggcagcattgaatggtgatatgacc
cagcaagctcgtgagcacgccttagaacgtttaagatcaggccgattagatattgtcgtg
gcaaccgatgtcgccgctcgtggtattgatattgagagaatcagtttagtggtaaactac
gacattactcttgatgcagaaagctatgtacaccgtattgggcgtacagggcgtgcaggt
cgctctggtcgtgccttattatttgttgaacctcgtgaacgccgtttgctgaaaaacatt
gaacatctcatcaaaaaaccgattgatgaagtctccattccaaaccacgaaatgttgatg
gcaaaacgtcgtgagaaatttaaagcccgtatttctcagcaattagagcatcacgattta
gagcaatatcgtgaattattggaagatttattcacagctgaccaagatcacgaagagtta
gctgccgcaatgatgatgatgctaaccgaaaaacaaaaattgattttaccacctgatcct
gaaatcaaacgcagtcgtgaacgtggtgggcgtgaaaatcctcgttcattagaacgtcgt
ggcggtcgtgaacatcgtgaaaacaatggcgtagcgatggatttataccgcattgaatta
gggcgtgaagatggcgtagaagttcgccacattgtcggtgcaattgccaacgaaggcgac
atcagtagtcgttacattgggcatatcaaactgcacgacacctattcaaccattgaattg
ccgcaaggtatgccaaaacatttagtccaacactttgctaataaagctcgtttattaagc
aaaccaatgcaaatgagcttaatcggtgcagtagaaaatggcggcggcgaacgtcgtggt
aatcctcgcaaaggcagtcgcaatgatcgtcaagagcgaggctttaaagaacgtaaaggc
ggttttaaagagaagcgttttaacgaacgtggtcgccgttaa
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