Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_15360
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Entry
F543_15360 CDS
T03018
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
btrh
Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F543_15360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrh03019
]
F543_15360
03110 Chaperones and folding catalysts [BR:
btrh03110
]
F543_15360
03029 Mitochondrial biogenesis [BR:
btrh03029
]
F543_15360
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
btrh04147
]
F543_15360
Enzymes [BR:
btrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
F543_15360
Messenger RNA biogenesis [BR:
btrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
F543_15360
Chaperones and folding catalysts [BR:
btrh03110
]
Heat shock proteins
HSP60 / Chaperonin
F543_15360
Mitochondrial biogenesis [BR:
btrh03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
F543_15360
Exosome [BR:
btrh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
F543_15360
Exosomal proteins of other body fluids (saliva and urine)
F543_15360
Exosomal proteins of breast cancer cells
F543_15360
Exosomal proteins of colorectal cancer cells
F543_15360
Exosomal proteins of bladder cancer cells
F543_15360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF5891
Motif
Other DBs
NCBI-ProteinID:
AHG84400
LinkDB
All DBs
Position
1554605..1556248
Genome browser
AA seq
547 aa
AA seq
DB search
MAAKDVKFGNDARVKMLNGVNILADAVKVTLGPKGRNVVLDKAFGAPTITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGI
DKAVSAVVEELKAISKPCESSKEIEQVGTISANSDETVGKLIAQAMEKVGKEGVITVEDG
TGLEDALDVVEGMQFDRGYLSPYFINKPENGTVELENPYILLVDKKISNIREVLAVLEAV
AKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTV
ISEEIGMELEKATLEELGQAKRVVISKDNTTIIDGIGDEAQIKGRIAQIRQQIEDSTSDY
DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALV
RAATKVAQTLKGDNEEQNVGIKLALRAMEAPLRQIVTNAGEEASVVARNVKDGSGNYGYN
AGTEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMITDLPKDEKADLAAGMGGM
GGMGGMM
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagacgttaaatttggcaatgatgctcgtgtaaaaatgttaaacggcgtg
aacattcttgcagacgcagtaaaagtaacccttggtccgaaaggtcgtaacgtggtgtta
gacaaagcattcggcgccccaactatcactaaagatggtgtttcagttgcaaaagagatc
gaattagaagataaattcgagaatatgggtgcacagatggttaaagaagtggcatctaaa
gcaaatgatgcagctggtgacggtacaacgaccgcaactgtacttgctcaagctatcgtg
aacgaaggtttaaaagccgttgctgcgggaatgaacccaatggatttaaaacgtgggatt
gataaagcggtttctgcggtagtggaagagttaaaagcgatttctaaaccatgtgaaagt
tcaaaagagattgagcaagtcggtacaatttctgcaaactctgatgaaactgtaggtaaa
ttgattgctcaagcgatggagaaagtgggcaaagaaggtgtgattaccgttgaagatggt
acaggcttagaagatgcattagatgtggttgaaggtatgcaatttgaccgtggttatctt
tctccgtatttcatcaacaaacctgaaaatggtacggtagagttagaaaatccatatatt
ttattagtagataaaaaaatctctaacattcgtgaagtattagcggtgttagaagcggta
gcaaaagcaggtaaaccattacttattatcgcagaagatattgaaggcgaagcattagca
accttagtggtgaatacgatgcgtggtatcgtgaaagtggctgcggtgaaagcaccaggc
tttggtgatcgccgtaaagcaatgttacaagatattgcaattttaaccgcaggtaccgtg
atttctgaagagatcggtatggagcttgaaaaagcaacccttgaagagctaggtcaagca
aaacgtgtagtgatcagcaaagacaataccactatcattgatggtatcggtgatgaagca
caaattaaaggtcgtattgcccaaattcgccaacaaattgaagattcaacctctgactac
gacaaagagaaattgcaagagcgtgtagcaaaacttgctggcggtgtggcggtaatcaaa
gttggtgctgcaaccgaagtggaaatgaaagagaaaaaagaccgtgttgatgatgccctt
cacgcaactcgtgccgcagtagaagaaggtatcgtccctggtggtggtgtggcattagtg
cgtgcagcaaccaaagtcgctcaaacattaaaaggcgacaacgaagagcaaaatgtgggg
atcaaattagcccttcgtgcaatggaagctccacttcgtcaaatcgtgaccaatgcgggt
gaagaagcgtcagttgtggctcgcaacgtcaaagacggtagcggtaactacggctataat
gcaggtacagagcaatatggcgatatgttagaaatgggtatcttagatccaaccaaagta
actcgttctgcattacagttcgccgcttctatcgcaggcttgatgatcaccactgaatgt
atgatcaccgacctaccaaaagatgaaaaagcagaccttgctgctggtatgggcggtatg
ggtggaatgggtggaatgatgtaa
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