Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_19900
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Entry
F543_19900 CDS
T03018
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
btrh
Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F543_19900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrh03019
]
F543_19900
03009 Ribosome biogenesis [BR:
btrh03009
]
F543_19900
Enzymes [BR:
btrh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F543_19900
Messenger RNA biogenesis [BR:
btrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F543_19900
Ribosome biogenesis [BR:
btrh03009
]
Prokaryotic type
rRNA processing factors
F543_19900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
KH_11
Motif
Other DBs
NCBI-ProteinID:
AHG84851
UniProt:
A0ABM5PGE5
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All DBs
Position
complement(2048386..2051325)
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AA seq
979 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPQGYVFQGRPNIKDIIQEGQEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSKKVFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARATRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIAL
SILRLVEEEAIKENSAQIHSIVPVQIATYLLNEKRKAISDIEKRHDVQVIVVPSESMETP
HFSVYRLRENEIVPALSYDLAKRYQDRQEEQMPHSHSDEALVTRNEPVITVESVLQNAEL
NIQPAPTPVKPAKPSLLSRFFAAIKGFFTEEEEKAPEKKPRNKTRNQRDRRNQRRERPNR
ERNPERNERNAVQAVKNEEKSANISEPKKRREIVEEIAGSSPQAEQQAKVAERRQRRELR
KKVRIEAAPAVDAGVVEPRVEKNELETTSVAPVANVTLAEVVIPEAKADTLEMKGENDNR
ENGRRRMPRHLRVGNQRRRERRETSQVVAPMPLTAAVMSPELASGKVSVALANTKVEEKP
SFLSVDEMLQQEQVVVTTAETENATHQESVQPFVDFVTQGTNRDLVKENKERKEQTREQT
DEHVTKSVKPEMPTAQPFGLVVSQPSTRDLVKENHERRGIPAGSANSVATQTVADTELAP
MDMPTSTYQSEYQFSGKLGTVSRVEHTTAEKTLAAAPSEEIHLVQLHEWQHSKYYFFGKG
FGGHTSAMSHVYSVARQPE
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgccacgcaaaaagaagagttgcgtgtagccctcgttgat
gggcaaagattgttcgacttggatatcgaaagcccaggacacgaacagaaaaaagctaat
atctacaaaggaaaaattacccgtgtcgagccaagtttagaggctgcattcgttgattat
ggtgctgaacgtcacggtttcctcccattaaaagaaatttcccgtgaatacttcccacaa
ggttatgtattccaaggccgcccaaatatcaaagatattattcaagaagggcaggaagtt
attgttcaagtgagcaaagaagagcgaggcaataaaggtgcagcattaaccacctttatc
tcccttgcgggcagttatcttgtcttaatgccaaacaatcctcgtgcaggcggcatttct
cgtcgtattgaaggcgatgagcgtttagagttaaaagaagcattagattgcttagatgtg
ccagaagacgtaggacttattgtgcgtaccgcgggtgttggtaaatcacctgaagagttg
caatgggacttaaaagtgctgttgcaccattgggaggctatcaagaaagcggctgaatct
cgccctgcgccattcttaatccaccaagaaagcgatgtgattgtacgtgcaatccgtgat
tatcttcgtcgtgacattggtgagatcttaattgatagcaaaaaagtatttgagaaagcc
aaaaatcatatccgcttagttcgccctgattttattaaccgtgttcgtttatacgaaggc
gaagtgccgttatttagtcattatcaaattgaatcgcaaatcgaatcagcattccagcgt
gaagtgcgtttgccatcaggtggatcaattgtgattgatgtcactgaagcattaactgca
attgatatcaactctgcgcgtgcaacccgtgggggggatatcgaagaaacggcattaaat
acgaatttagaagcggcagatgaaattgctcgccaattgcgtttgcgtgacttaggcggt
ctaattgtaattgattttattgatatgacccctgtgcgtcaccagcgcgaagtagaaaac
cgtattcgtgaagcgactcgtcaagaccgtgcgagaattcaatttggtcgaatttctcgt
ttcggcttgcttgaaatgagtcgtcagcgcttaagcccatcattaagtgaagcatcaagt
catgtttgtcctcgctgtcagggtacgggtaaagtacgtgataatgaatccatcgcactt
tcaattttacgtttagtcgaagaagaagcgattaaagaaaattcagcacaaattcacagt
attgtgccagtacagattgcaacgtatttacttaatgaaaaacgtaaagcgatcagcgat
attgaaaaacgtcatgatgtacaagtgattgttgtaccaagtgaaagtatggaaaccccg
cactttagcgtttatcgcctacgtgaaaatgaaattgtgccagcacttagctatgattta
gcgaagcgttatcaagatcgccaagaagagcaaatgccgcacagccattcagatgaagcg
ttagttactcgcaatgaaccggtgatcacagttgaaagcgtgctacaaaatgcggaatta
aatattcagccagcaccaacgccagttaaaccagctaagccatcgctactgagccgtttc
tttgcggcaattaaaggtttctttactgaggaagaagagaaagcgccagagaaaaaaccg
cgtaataaaacacgtaatcagcgcgatcgccgtaatcagcgtcgtgaacgcccaaatcgc
gagcgtaacccagaacgtaatgagcgtaatgctgtgcaagcggttaaaaatgaagaaaaa
tctgcaaatattagtgagccgaaaaagcgtcgtgagattgtggaagagattgctggtagc
tcaccgcaagccgagcaacaagcaaaagtagcagaacgccgtcagcgccgtgaactgcgt
aaaaaagtgcgaattgaagcagcaccagcggtggatgcaggagtagttgaacctcgtgtt
gaaaaaaatgagctagagacgacatctgtcgcaccggtagcaaatgttacgcttgccgaa
gtcgtgattcctgaggcaaaagccgatacattggaaatgaagggcgaaaatgacaatcgt
gaaaatggacgtcgtagaatgccacgtcacttacgagtgggtaatcaacgtcgtcgtgag
cgtcgtgaaacaagccaagttgtcgcgccaatgccattaacggctgctgtaatgtcgcca
gaactggctagtggtaaagttagtgttgccttagcgaatacaaaagtagaagagaaaccg
agtttcttatctgttgatgagatgctgcagcaagagcaagttgttgttacaacagcagaa
acagaaaacgcgacacatcaagaatctgttcagcctttcgttgatttcgtcactcaaggt
acaaaccgtgacttagtgaaagaaaacaaagagcgtaaagagcaaactcgcgaacaaacg
gatgagcatgtcacaaaatcggtaaaaccagaaatgccaactgcacaaccatttggttta
gtggttagtcagccgagtactcgtgatttagtgaaagaaaaccatgagcgtcgtggtatt
ccagcaggaagcgcaaattctgtggcgactcagactgtagcagacacagaacttgcacca
atggacatgccaacgtccacttaccaaagtgaataccaatttagcggtaaacttggcacg
gtgtctcgtgtagaacatactaccgcagagaaaaccttggctgcagcgccaagtgaagaa
atccatttagttcaactacatgagtggcaacattcaaaatactatttcttcggtaaaggc
tttggtgggcacactagcgcaatgagccatgtttattcggttgcgagacagcctgagtaa
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