Bordetella trematum: SAMEA390648700008
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Entry
SAMEA390648700008 CDS
T04322
Symbol
polC_1
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
btrm
Bordetella trematum
Pathway
btrm03030
DNA replication
btrm03430
Mismatch repair
btrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA390648700008 (polC_1)
03430 Mismatch repair
SAMEA390648700008 (polC_1)
03440 Homologous recombination
SAMEA390648700008 (polC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
btrm03032
]
SAMEA390648700008 (polC_1)
03400 DNA repair and recombination proteins [BR:
btrm03400
]
SAMEA390648700008 (polC_1)
Enzymes [BR:
btrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA390648700008 (polC_1)
DNA replication proteins [BR:
btrm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA390648700008 (polC_1)
DNA repair and recombination proteins [BR:
btrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA390648700008 (polC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
NdhN
Motif
Other DBs
NCBI-ProteinID:
SAI65970
UniProt:
A0A157S6B8
LinkDB
All DBs
Position
1:complement(9392..9982)
Genome browser
AA seq
196 aa
AA seq
DB search
MAYFPSRRRVTPAADTTARALAALNVPFVVADLETTGLSPASCEILEFAAVRVHPEGGIE
GEYSQVVRIEGRVPSFIARLTGISQDEVERDGRPIAETLDAFLDFARGAPMFFHNASFDS
RFLRATAQRHARVFDPDIHCTLQLARRAWPELASHKLGVLAAHLGASTPTHRALADVHTT
VAVALAARARLTGKGR
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
ttggcttacttcccttcccggcgccgcgtgacgcctgccgccgacaccaccgcacgcgcg
ctggccgcgctcaatgtccctttcgtggtggccgacctggaaaccacggggttgtcgccg
gcttcctgcgaaatcctcgaatttgctgccgtccgggtgcatccggaagggggcatcgag
ggcgagtacagccaggtggtacgcatcgagggccgggtgccttccttcatcgctcgcctg
accggcatctcgcaggatgaggtcgagcgcgacggccggcccatcgccgagacgctcgat
gccttcctggattttgcccggggcgccccgatgtttttccacaacgcctcgttcgattcg
cgtttcctgcgcgccacggcgcaacgccatgcgcgggtgttcgacccggatatccactgc
acgctgcaactggccaggcgagcctggcccgagctggcctcgcacaaactgggtgtgctg
gccgcccacctgggggcgtcgacgccgacgcaccgggcgctggccgatgtgcataccacc
gtggccgtcgccctggccgcacgcgcccggctgaccggcaaagggcgctga
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