Bordetella trematum: SAMEA390648700345
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Entry
SAMEA390648700345 CDS
T04322
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
btrm
Bordetella trematum
Pathway
btrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA390648700345 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrm03019
]
SAMEA390648700345 (rhlE_1)
Enzymes [BR:
btrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA390648700345 (rhlE_1)
Messenger RNA biogenesis [BR:
btrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA390648700345 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
LBP_BPI_CETP_C
Motif
Other DBs
NCBI-ProteinID:
SAI66613
UniProt:
A0A157KY34
LinkDB
All DBs
Position
1:complement(329780..331228)
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AA seq
482 aa
AA seq
DB search
MTQATSSTASAPETRTFAEFGLHPLLLKSIAETGYTSPTPIQAQAIPVVVEGRDVMGAAQ
TGTGKTAAFTLPILHRLMPLANSSASPARHPVRALILAPTRELADQVYESVRRYSLHTPL
RSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDM
GFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQIA
YPMSGDAKRAAVVHLVKSRGLKQVIVFSNTKLGTARLARQLERDGVKAESIHGDKSQLDR
MKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGE
AIALFAPDEERYLLDIEKLIKRQVPRGKLELPPELLGHGHQGRAERGSREGGREGRDNHR
DNGGREHARRTPRQPVDEFFFKPYEPSAGAAANALTPEPDAAASPAPKRQLAVLLGGGRK
PG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgactcaagctacttcttccaccgcgtctgctcctgagacgcgtacctttgccgaattc
ggactgcacccgcttctgctcaagtccattgccgaaacgggctacaccagccccacgcct
atccaggcgcaggcgattccggtcgtcgtggaaggtcgcgacgtcatgggcgcggcccag
accggcaccggcaagacggccgcgttcacgctgccgattctgcaccggctcatgcccttg
gccaacagcagcgcctcgcccgcccgccatccggtgcgcgccttgattctggcgccaacg
cgcgagctggccgaccaggtctatgaaagcgtcaggcgctacagcctgcacacgcccttg
cgcagcgccgtagtcttcggcggcgtggacatcggtccgcagaaagaggcgttgcgtcgt
ggttgcgaggtgctggtcgccacgcctggccgactgctcgaccacgtcgagcagaaaaac
gtcaacctgagccaggtcggcatcctggtgctggacgaggccgaccgcatgctggacatg
ggattcctgccggacctggagcggatcatccgcctgttgcccgcgcagcgccagggcctg
ctgttttcggctacgttcagcaatgaaatccgcaagctcggacgctcctatctcaaccag
ccggttgagatcgaagtggccgcgcgcaacgccaccgccgacaccgtcacgcagattgcg
tatccgatgtcgggcgacgccaagcgtgccgccgtggtgcatctggtcaagtcgcgcggc
ctcaagcaggtcatcgtgttctccaacaccaaactcggcacggcgcgtctggcccgccag
ctcgagcgcgacggcgtcaaggccgagtcgattcacggcgacaagtcgcagctcgaccgc
atgaaggctcttgaagccttcaaggccggcgaactcgaggtgctggtggcgaccgacgtc
gcggcccggggcctggacgtcgccggtgtgccctgcgtcatcaactacgacctgccgtac
aacgccgaggactacgtgcaccgcatcggccgtaccggtcgggccggcgccagcggcgag
gcgattgccttgtttgcccccgatgaagagcgttatctgctcgacatcgaaaaactcatc
aagcgtcaggtgccgcgtggcaagctggagctgccgcccgaactgctgggccatggccac
cagggtcgcgccgagcgcggcagccgtgagggcggtcgcgaaggtcgcgacaaccatcgc
gacaatggcgggcgcgagcatgcgcgccgcacgccgcgacagccggtcgatgagttcttc
ttcaagccctatgagccgtcagccggtgcggcggcaaacgccctgacgccggagcccgat
gcggccgcttcgccggcgcccaagcgccagctggccgtgctgctgggcggcgggcgcaag
cccggctga
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