Bordetella trematum: SAMEA390648701114
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Entry
SAMEA390648701114 CDS
T04322
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
btrm
Bordetella trematum
Pathway
btrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA390648701114 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btrm03019
]
SAMEA390648701114 (rhlE_2)
Enzymes [BR:
btrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA390648701114 (rhlE_2)
Messenger RNA biogenesis [BR:
btrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA390648701114 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
SAI68155
UniProt:
A0A157MNT7
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All DBs
Position
1:1181455..1182942
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AA seq
495 aa
AA seq
DB search
MSDGLPLELLLSTYSSFADLELADTLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQ
TGTGKTAGFTLPILHRLMQNKPAKRTPGRPRCLILTPTRELTAQVAESVQVYGKYTGLSS
MVMFGGVNINPQISALRKPLDILVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGF
IRDIRKVLALLPKSRQNLLFSATFSDEIRELARGVLNNPGEVSVTPRNTATELVTQTVHL
VDQAHKRDLVSHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTR
ALAGFKDGSVAVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAV
SLVDDSEIKLLKAIERLIKKPIERRTVADWTPPVGGAERDDDDRDRERGPRGRGNGGARG
NGGRGGNAAGARSGGGGGNGRAPRNEGRSAAPRSANSSAARAPAPGASREARPAAKPAAS
RNPRNAPGRGVLLGK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacgggctgccgctggagttgttgttgtctacctattcttctttcgccgacctc
gagctggctgacacccttttgcgtgccatcgccgaaaccggctataccgccccgacgccc
attcaggcgcaggccattccccaggtactcaagggcggcgacctgcttgccgccgcccag
acgggcaccggcaagaccgccggcttcaccctgcccatcctgcatcgcctgatgcagaac
aaacccgccaagcgcacgcccggccggccgcgctgcctgatcctgaccccgacccgcgaa
ctgaccgcccaggtggccgagtcggtgcaggtctatggcaaatacaccggcctgagctcc
atggtcatgttcggcggtgtgaacatcaacccgcagatcagcgcgctgcgcaagcccctg
gacatcctggtggccaccccgggccgcctgctggaccacgccggccagaaaaccatcgac
ctctcgggcgtggaaatcctggtgctcgacgaagccgaccgcatgctggatatgggcttc
atccgcgatatccgcaaggtgctggcgctgttgcccaagtcgcgtcagaacctgctgttc
tcggccaccttctccgacgagatccgcgagctggcccgcggcgtgctgaacaatccgggc
gaagtgtccgtgaccccgcgcaacaccgccaccgaactggtcacccagacggttcacctg
gtcgatcaggcgcacaagcgcgacctggtcagccacctgatccgcgaaagcggctggcat
caggtgctggtgttcacccgcaccaagcatggcgccaaccgcctggccgaaaagctggtc
aaggacggtctgtcggcggccgccatccacggcaacaagagccaatcggcccgcacccgc
gcgctcgccggcttcaaggacggcagcgtcgccgtgctggtcgccaccgatatcgccgca
cgcgggctggacatcgaccagctgccgcaggtggtgaacttcgagctgcccaacgtgccc
gaagactacgtgcaccgcatcggccgcaccggtcgcgccggcgccacgggcgcagcggtc
tcgctggtcgacgacagcgagatcaagctgctcaaggccatcgagcgcctgatcaagaaa
cccatcgaacgccgcaccgtggccgactggaccccgccggtcggcggcgccgaacgcgac
gacgacgaccgtgatcgtgaacgcggcccgcgcggacgcggcaatggcggcgcacgcggc
aacggtgggcgcggcggcaacgctgcgggcgcccgcagcggtggtggtggtggcaatggc
cgcgcgccgcgcaatgaaggccgcagtgctgcgccgcgcagcgccaacagcagcgccgcc
cgtgccccggccccgggcgcttcccgcgaagcccgcccggccgccaagccggcagcgtcc
cgcaatccccgcaacgctcccggccggggcgtgctgctgggcaagtaa
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