Bordetella trematum: SAMEA390648701120 Help Entry SAMEA390648701120 CDS       T04322                                  Symbol rpoN1 Name (GenBank) RNA polymerase sigma-54 factor   KO K03092   RNA polymerase sigma-54 factor Organism btrm  Bordetella trematum Pathway btrm02020   Two-component system btrm02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:btrm00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     SAMEA390648701120 (rpoN1)  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     SAMEA390648701120 (rpoN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:btrm03021]     SAMEA390648701120 (rpoN1) Transcription machinery [BR:btrm03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      SAMEA390648701120 (rpoN1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID CHDNT Motif Other DBs NCBI-ProteinID:  SAI68170 UniProt:  A0A157MNK8 LinkDB All DBs Position 1:complement(1187215..1188642) Genome browser AA seq 475 aa AA seqDB search MQNIVPMTRPALELRASQHLALTPQLQQSIRLLQLSALELEAEIAQALADNPMLERAEDD VAAPQDAEAASGESAAAELEDAWEASQRRLDEAGGGDDDLPQAARETTLREHLLGQLALT RAAPRDAALTALLIDELDDNGYLASPLEEIRQWLPVELDIDDDELRAALRLLQSFEPPGV GARDLAECLSLQLRQPDTACLPEAADVQVLECARRLCAGHLPLLAAGNPQRLREALAVDD ATLRAARALIVRLDPRPGRAWTAPAADFAVPDVLVHRRAAGWQAVLNPAVMPRLHINQHY ANLLANRRESAYASLQGQLQQARWMIRNVEQRFDTILRVSQAIVAHQAAFFSEGPAAMRP LILKDIAGELGLHESTISRATAQKFMLTPYGTMELKRFFGSGVATESGETTSATAVQAHI RQMVAEEEPGRPLSDSQLVQQLADKGIVIARRTVAKYRELLRIAPATVRRAQAGR NT seq 1428 nt NT seq  +upstreamnt  +downstreamnt atgcaaaatattgtacctatgactcgtcctgcgttagaacttcgcgcttcacagcatttg gcattgacgccacagctgcaacagtccattcgattgttgcagctttcggcgctggagctg gaggccgagattgcgcaggccctggccgacaatcccatgctggagcgcgccgaggacgat gtggccgcgccgcaggatgccgaggcggcttcgggcgagtccgcagccgccgagctggaa gatgcctgggaggcgtcgcagcggcgtctggacgaggcgggcggcggcgatgacgatctg ccccaggcggcgcgcgagacgacgttgcgcgagcatttgctgggtcagctggcgcttact cgcgctgcgccgcgcgatgccgccctgaccgccctgctgatcgacgaactggacgacaac ggttatctggcctcgccgctggaggaaatccggcagtggttgccggtcgaactggacatc gacgacgacgagctgcgtgccgcattgcgactgttgcagtctttcgagccgccgggcgtc ggcgcgcgcgatctggccgagtgcctgtcgctgcaattgcgccagccggataccgcatgc ctgcccgaggcggccgacgtccaggtgctggagtgcgccaggcgactgtgcgccggccat ttgccgctgctggctgccggcaacccgcagcggctgcgcgaggctctggcggtggatgac gctaccctgcgggctgcgcgcgccctgatcgtgcgcctggacccgcgtccggggcgggcc tggacggccccggcggccgattttgccgtgcccgatgtcctggtgcatcgccgcgccgca ggatggcaggcggtgctcaatccggcggtcatgccgcgcctgcatatcaatcagcattac gccaacctgctggcgaaccggcgcgagagcgcctatgccagcctgcaaggccagttgcag caggcgcgctggatgatacgcaacgtcgagcagcggttcgatacgatcctgcgggtatcg caggccatcgtggcgcatcaggcggccttcttcagcgaagggcctgccgcgatgcgtcct ctcatcctcaaggacattgccggcgaactgggcttgcacgagtcgaccatttcgcgcgcc accgcccagaaattcatgctcacgccgtacgggaccatggagctcaagcgttttttcggc agcggcgtggcgaccgagagcggcgagacgacgtcggccacggccgtgcaggcgcatatc cggcagatggtggccgaggaggagccgggccggccgctctcggatagccagcttgtccag cagttggccgacaaaggcatcgtgatcgcccgacgcaccgtggcgaagtaccgtgaactg ctgcgcatcgcgccggcgacggtacggcgcgcgcaggcggggcgttga

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