Bordetella trematum: SAMEA390648702813
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Entry
SAMEA390648702813 CDS
T04322
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
btrm
Bordetella trematum
Pathway
btrm03410
Base excision repair
btrm03430
Mismatch repair
btrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA390648702813 (recJ)
03430 Mismatch repair
SAMEA390648702813 (recJ)
03440 Homologous recombination
SAMEA390648702813 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btrm03400
]
SAMEA390648702813 (recJ)
DNA repair and recombination proteins [BR:
btrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SAMEA390648702813 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SAMEA390648702813 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA390648702813 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
bMG1
Motif
Other DBs
NCBI-ProteinID:
SAI71534
UniProt:
A0A157SMI8
LinkDB
All DBs
Position
1:complement(2983015..2984757)
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AA seq
580 aa
AA seq
DB search
MAAGAQNGLETLVVIPRLTVRHADLAACQNLQAAGIHPLLSRLWAARGVVDPAQTRLAWP
SMLPPGQLTHAGHAAAVLADAIAQGKRLLIVADYDCDGATACAVGLRALAAMGAQVDFLV
PNRFETGYGLSPAVVDLALRHRNGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLP
GDSLPDALAIVNPNQPGCGFPSKNLAGVGVIFYLMLALRAELRRRGVFAADGGPRLDALA
DLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGLRALFAVAGREPRSANGFDLGFA
LGPRINAAGRLADMSLGIACLTTDDEDQALAMARELDQINRERRGIEAEMREQAMAAMEA
PDAVAGATVCVFDPSWHQGVVGLVASRLKEKFWRPTLAFAPAGDDEIRGSGRSIPDVHLR
DVLDLVSKRHPGLIRKFGGHAMAAGLTLGVDGFDAFAPAFDAAVRELTGRDRFEPLLETD
GSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRNQRLVGEKHLKLALERGGQRFDA
IWFGHDESLPERIQAAYRLEQNVWNGMVTAQLVIEYAGPV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggctgccggcgcccaaaacggattggaaacgctggtggtcatcccccgtctgactgtt
cgccatgccgatctcgcggcctgccaaaacctgcaggccgccggcatacaccccctgctg
tcgcgcctgtgggcggcgcgcggcgtggtcgatcccgcccagacccgtctggcctggccg
tccatgctgccgcccgggcagctcacccatgccggccatgcggccgccgtgctggcggac
gcgatcgcccagggcaagcgcctgctcatcgtggccgactacgattgcgacggcgcgact
gcctgcgcagtcggcctgcgcgcgctggccgccatgggcgcgcaagtcgatttcctggtc
cccaaccgattcgagaccggctacggcctgtctccggcggtggtcgacctggccctgcgg
caccgcaacggcaaacccgacatcatcatcaccgtggacaacggcatcgccagcgtggac
ggcgtggccgccgccaatgcggccggcatcggtgtggtcattaccgaccaccacctgccg
ggcgactcgctgcccgacgccctggccatcgtcaacccgaaccagccgggctgcggtttt
ccgtccaagaacctggccggcgtgggggtcatcttctatctgatgctggcgctgcgggcc
gaactgcgccgccgcggcgtgtttgccgccgatggcgggccgcgcctggacgcgctggcc
gacctggtcgccctgggtaccgtggccgacgtggtcaagctcgatgccaacaaccgcctg
ctggtcacgcaaggcctgcagcgcatgcgcgccgggcgcatgcagcccggcctgcgcgcg
ctgtttgcggtcgccgggcgcgagccgcgcagcgccaatggttttgacctgggttttgcc
ctcggcccccgcatcaacgccgccggccgcctggcagacatgagcctgggcatcgcctgc
ctgaccaccgatgacgaagaccaggccctggccatggcgcgcgaactcgaccagatcaac
cgcgagcgacgcggcatcgaggccgaaatgcgcgagcaagccatggcggccatggaagcg
cccgatgccgtggccggcgccaccgtctgcgtcttcgatcccagctggcaccagggcgtg
gtcgggctggtggcctcgcgcctgaaagaaaaattctggcgccccaccctggctttcgcg
ccggccggcgacgatgaaatacgtggttcgggccgttccattcccgatgtgcacctgcgc
gacgtgctggacctggtttccaagcgccaccccggcctgatccgcaagttcggcggccac
gccatggccgccgggctcaccctgggcgtagatggtttcgacgcttttgcccccgccttc
gatgccgccgtgcgcgaactgaccgggcgcgaccgcttcgaacccctgctggaaaccgac
ggctccctggagtcgggctatgccaacgccgaagtggccgggctgctgcagcaacaggtg
tggggcgccggattcgccgccccgttgttcctcgatgagttcacagtgcgcaaccagcgc
ctggtcggggaaaaacacctcaaactggcgctggagcgcggcggccaacgctttgacgca
atctggttcggccacgacgagtccctgccggaacggatccaggcggcctaccggctggag
cagaatgtctggaacggcatggttaccgcccagttggtcatcgaatacgccggtccggtt
tga
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