Bordetella trematum: SAMEA390648702822
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Entry
SAMEA390648702822 CDS
T04322
Symbol
bipA_2
Name
(GenBank) outer membrane ligand binding protein
Organism
btrm
Bordetella trematum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_6
IAT_beta
Tcp10_C
ESPR
RibLong
DUF2756
Glucodextran_B
Motif
Other DBs
NCBI-ProteinID:
SAI71558
UniProt:
A0A157SM61
LinkDB
All DBs
Position
1:complement(2991504..2996804)
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AA seq
1766 aa
AA seq
DB search
MNKKLYRVVWSIARRAWVVADERARNSRSTRASRRRGSRGRDVVAIAVGGSLVTQALLPL
SALAQEAPTVPVAAQQGRDSGWSRRLAGQVESLARAQAEGRRDGQLNADYLKREAQAQVN
ASLQRGVQAVKDSGLPFLRNLQGGLSHDFHTGRSALQLDTIDEVYRAGPNTGLLQLGAHN
QNDRPTANAGLVYRRDVNEALMLGANAFLDYEFGKQHLRGSVGIEAIAPEFTLYGNVYVP
MSQWRGAKRDGRRQERPASGMDIGGRYQPSVAPGLSLKAAYFRWNGANIDYFDTGRVQDR
ASGFKYGLEYRPVPLVSLGLEQIKVVGGERQTRVQLGLFIHFSEPLSKQLRRGASGAPAF
SLDNPRHALVERENRIVLNTRHKEITLPLSLSLVSTHPVDGRVTVTGLTQPRATVSLRMP
DGSSGSVTADVAGRFSYTSQHDQPSGAVVLGAANTRGDRSRELTYPYVDEVTLGDLRVVV
MTKAVNPVDHSVILDGNTEPMMEVRVVFPGGEAMSVRADDKGNFRVGSRKRVSEGRIMVQ
AIDPETHKEARTVVEHVPPAIVAPTIDEVTTDAGTGRVTVTGLAEPGSEVELRFTDHSRV
RVPVGDDGHYRVTSAGDIPSGELQAVRVPKADEGEVASRHLYKDNHDKTPPGTPVIATLS
TNPDDGRLTVAGSAEPGAEVTVTFPDGTTKTVRADADGTYTATSDGDVPSGTIMVNATDA
SGNTSGKASREYADDVDRTPPAVTISGTATHADTGRVTVTGMAEPDAKVLVRFPDGTEKM
GRAEADGSYTVTSDHDIPSGMIAAQAQDTAGNKSPQAFRRYTDEADKSAPEPPTITTLTA
SEDDGRLTVTGTAEAGADVTVTFPNDTTTTVRADGDGRYVATSARDVPSGMVRASATDAA
GNTSDEVTRQYTDTVDRTPPAITITGTTADAATGRVTVSGTTEADADVTITFPDGTRKTA
KADGEGRFTLTSDGSMPSGDIKAKSRDKAGNESPPITQAYIDTTAPAVSIIAATTDPATG
KVTVTGASEAGARIALRFPDGQTITVTADAGGNYSAASPRDVTASGNITAIATDASGNHS
PQANKAYTDDVDKTAPEGVVITSARADASGRVTVTGTAEPHSTVTIAWPGGETKTTMAGT
DGSYTASSARPVPSGDITATATDKSGNTGPAATHAYTDETAPPAPTFTTVDTDDTTGVVT
VTGKAEPGSTVTVTLPGGASKTVPADATSGVFTATSDGDVPAGIFRASARDAAGNVSPEA
RRDYADTVDKTPPAAPLITTLTPDTTHGRLTVTGTAEPGSTVTVTFPDGTEKTVTATEGG
AYTATSENDVSSGAIKASATDAQGNKSPETTRDYIDAVDKVAPVVTITELATAAETGRVT
VTGHTEPEAAVRVTFPDGSHKNTTAGRDGSYSATSDADIASGGIRAQATDAAGNASAEVT
RRYDDSVDKTAPDAPVITGVATDSSSGRVTVTGTAEPGAEVTLTFPDGSTKTGTADATNG
AFTATSDGDVPTGEIKARATDAARNESPQASRHYEDEVVDLRPPAAPTISSMTTDARNGH
VTVQGTADPGVEVKVTFPGDTEVRVTADSSGNYRASSGKDIAGGQVKAVALRGTLSSDEV
TGTYTDTWLPPLPKGAFTSVLETDRWYLMYLTKQAGAGFTAQVGSVNLAYASNPESVSVS
VEPRNASDTAAVTVADFLRPLVTKKILYDRRTGENALFIGFQDRGGWETKPYRAIPAGIY
EDRILVKITTPTGTASVLLGFSITDG
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaaactctaccgtgtggtttggtctatagcgcgacgcgcctgggtggtggcc
gatgagcgggcgcgaaacagcaggtcgacacgtgcttcgcgccgccggggttcgcgcggc
cgcgatgtcgtggcgatcgcggtcggtggcagtctggtaacgcaggccctgttgccgttg
tcggccctggctcaggaagcgcccaccgtgcctgtggccgcgcaacaaggccgggactcc
ggttggtcgagaaggctcgccggccaggtcgaatccctggcccgggcgcaggccgaggga
cggcgggatggacagttgaatgccgactatctcaagcgcgaagcccaggcccaggtcaac
gcctccttgcagcgcggcgtgcaggcggtgaaggactccggcctgccgtttctgcgtaac
ctgcaaggggggctcagccatgactttcataccgggcgcagcgccctgcaactggacacc
atcgatgaggtgtatcgggccggtccgaacacgggcctgttgcaactgggcgcgcacaac
cagaacgacaggcctaccgccaatgcgggcctggtgtaccggcgcgacgtgaacgaagcc
ctcatgctcggcgccaatgcctttctggactatgagttcggcaagcagcatctgcgcggc
tccgtgggcatcgaggcaatcgcaccggaattcaccctgtacggcaacgtctatgtgccg
atgtcccagtggagaggcgccaagcgcgatggacgccgccaggagcgacccgcatcgggc
atggacatcggtggcagatatcaaccttccgtcgcgccgggcctgagcctgaaggcggcc
tacttccgctggaacggcgccaacatcgattacttcgacacaggccgcgttcaggaccgc
gcctccggcttcaagtatggcctcgagtatcgccccgtaccactggtcagcctggggctg
gagcagatcaaggtggtgggcggggagcgtcagacccgcgtgcaactcggtctgttcatc
cacttttccgaacccttgtcgaaacagttgcgccggggcgcttcgggcgcgccggcattc
tcgctggacaaccctcgccatgcgctggtcgaacgcgaaaaccgcatcgtgctcaatacg
cggcacaaagagatcaccctgcccctgagcctatcgctggtgagcacccacccggtcgac
ggtcgtgtgaccgtcacagggctgacccagccgcgagcgaccgtcagcttgcgcatgccc
gacggctcgtccgggtccgtcacggccgatgtcgccggccgcttcagctatacatcgcaa
cacgaccagcccagtggcgcagtggtattgggcgccgccaatacacggggcgaccgcagc
cgcgaactgacatacccctatgtcgacgaagtgaccctcggggatctccgtgtggtcgtg
atgaccaaggcggtcaaccctgtcgatcactctgtgatcctggacggcaataccgaaccc
atgatggaggtgcgcgtggtcttccccggaggggaagccatgtcggtgcgcgccgatgac
aaaggcaacttccgggtcggctcgcgcaagcgcgtgtcggaagggagaatcatggtgcag
gccattgatccggaaacccacaaggaggcgcgcaccgtcgtcgaacacgtgccgcccgcc
atcgtggcaccaaccattgacgaggtgaccacggacgccgggaccggacgcgtcacggtg
accgggctggccgaaccgggcagcgaagtggagctgcgtttcaccgaccacagccgcgtc
agggtcccggtcggagacgatggccattaccgcgtcacatcggccggggatatcccctcg
ggcgagctgcaggccgtgcgggttcccaaagcggatgaaggcgaagttgcctcgcgccac
ctgtacaaggacaaccatgacaagacgccgcccggcacgcccgtcatcgccacgctgagc
acgaacccggacgatggccggctgacggtggccggcagcgccgagcccggcgccgaggtc
acggttaccttcccggacggcacgaccaaaaccgtccgtgcggatgcggacggcacctac
acggcgacctcggatggcgacgtaccgtcaggcacgatcatggtcaatgccaccgacgcc
agcggcaataccagtggcaaggcgagccgtgagtatgccgatgacgtagacagaacgccg
cctgccgtgacgatctcaggtacggctacgcatgccgataccgggcgcgtcacggtgaca
gggatggccgaacccgacgccaaggtgctggttcgctttccggacggcaccgaaaaaatg
ggccgggccgaggccgacggcagctatacagtgacctccgaccacgacatcccctcgggc
atgattgcggcgcaggcccaggacacggcgggcaacaaaagcccccaagccttccggcgc
tatacagacgaggcggacaagagcgcgcctgagccccccacgatcacgaccctgacggcc
agcgaggacgacggccgactgacggtgaccggcaccgccgaggcgggggccgacgtcacg
gttaccttcccgaacgacacgaccacaacggtacgcgccgacggcgatggccgttacgtc
gcgacctcggcgcgggatgtgccttcgggcatggtccgggcatcggccacggatgcggcg
ggcaacaccagcgacgaggtgacccgccagtacaccgacaccgtggacaggacgccaccg
gcgatcacgatcaccgggacaaccgcggacgcggccaccggccgcgtgaccgtgtccggc
acaaccgaggccgacgccgacgtgacaatcaccttcccggatggcacgcgcaagaccgcc
aaggcggatggcgagggcagattcacgttgacctccgatggcagtatgcccagcggcgat
atcaaggccaaatcacgcgacaaggccggcaatgaaagtccgcccatcacgcaagcctac
atcgacacgacagcgcctgcggtcagcatcatcgcggcgacgaccgacccggcaaccgga
aaggtgacggtgacaggcgccagtgaggccggcgcgcgcatcgccctgcggttcccggac
ggccagaccatcaccgtgacggctgatgccggcggcaactacagcgcagcctcgccgcgg
gacgtaaccgcgtcgggaaatatcaccgccatcgccaccgatgccagcggcaatcacagt
ccgcaggcaaataaggcctacaccgacgacgtggacaaaaccgcgccagaaggcgtggtc
atcacatccgcgcgggccgacgccagtggacgggtcacggtgacaggcacggccgagccg
cacagcacggtcacgatcgcgtggccgggtggcgaaacgaagacaacgatggcgggcacg
gatggcagctatacggcctcatcggcgcgtccggtgccatcgggcgacatcaccgccacg
gcgactgacaagtcaggcaacaccggcccggccgccacgcacgcctacaccgacgagacg
gcgccgcctgcgccgacattcaccaccgtcgacaccgatgacacgacgggcgtggtaact
gtcacaggcaaggccgagccgggcagcacggtcacggtgacgttgccgggcggggcaagc
aaaaccgtcccggccgatgccacttccggcgtctttaccgccacctcggatggcgatgtg
ccagcgggcattttcagggccagcgcgcgggatgcggcgggcaacgtcagccccgaggcg
aggcgcgactatgccgacacggtcgacaagacaccgccggcagcccccctcatcacgacg
ctgacgccggataccactcatgggcgtctgacggtgacagggacagccgaacccggcagc
accgtcacggtcactttcccggacggcacagaaaagacggtgacggcaacggaaggcggc
gcctacaccgccacatccgagaacgatgtgtcctcgggggccatcaaggcatccgccacc
gatgcacagggcaacaaaagccctgagacaacgcgcgactacatcgatgcggtggacaag
gtcgcaccggtcgtgaccatcacagagcttgccacagcagccgagacaggccgggtgacg
gtcaccggacacaccgagcccgaggccgccgtgcgcgtcaccttcccggatggaagccac
aaaaacacgaccgctggacgcgatggcagctatagcgccacttccgacgccgatatcgcg
tcgggcggaatccgcgcacaagccacggatgccgcaggcaatgcaagtgctgaggtgacc
cgacgctatgacgatagcgtcgacaaaacggcacccgatgcgcccgtcatcacaggcgtt
gcgacagacagctcctcgggacgcgtgacggtgacgggcacggccgagccaggcgccgag
gtaaccctcaccttccccgatggcagcaccaaaaccggcacggcagacgccacaaacggt
gcgttcacggcaacctcggatggcgatgtgccgaccggcgaaatcaaggcccgggcgacc
gacgccgcgcgcaacgagagtccgcaagccagccggcactatgaagacgaagtggtcgac
ttgcgcccacccgctgcgccgacgatctcgtccatgacgaccgacgcccgaaacgggcat
gtcacggtgcaaggaaccgctgatccgggggtcgaagtgaaggtgacattccccggggac
acggaggtgcgcgtaacggccgatagcagcggcaactaccgcgccagttcgggcaaggac
atcgcgggtgggcaggtcaaggctgtcgccctgcgcggcaccctgtccagtgacgaggtg
accggcacatacacggacacctggttgccaccgcttcccaaaggggcgtttaccagcgtg
ctcgagaccgaccgctggtacttgatgtatttgaccaaacaggctggcgcggggttcacc
gcccaggtagggtcggtcaacctggcttatgcctctaaccccgagtcggtcagcgtcagt
gtcgaaccgcgcaatgccagcgatacggcggcagtcaccgttgcggatttcctgaggcca
ctggtcacgaagaaaatcctgtatgaccgtcgcactggcgagaacgccttgttcatcggg
ttccaggatcgaggcggctgggagaccaagccgtacagggcaattcctgccggcatctat
gaagaccgcatactggtcaagatcacaaccccgaccggcacggccagcgtactgttgggc
tttagtatcactgacggctag
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