Bordetella trematum: SAMEA390648704066
Help
Entry
SAMEA390648704066 CDS
T04322
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
btrm
Bordetella trematum
Pathway
btrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA390648704066 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
btrm03021
]
SAMEA390648704066 (rho)
03019 Messenger RNA biogenesis [BR:
btrm03019
]
SAMEA390648704066 (rho)
Transcription machinery [BR:
btrm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMEA390648704066 (rho)
Messenger RNA biogenesis [BR:
btrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA390648704066 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
ResIII
AAA
Phostensin_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SAI74136
UniProt:
A0A157Q7J5
LinkDB
All DBs
Position
1:4317238..4318494
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVTPETIKHRIMFENLTPLHPNRVMRLERDIKSEENLTGRILDVFAPIGKGQRGLIVAPP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaatgaactgaaggcgctgcacgtctcgcagttgctggaaatggccgctggc
ctggaaatcgagaacgccaaccgtctgcgcaagcaggagttgatgttcgccatcatgaag
cggcgcgccaaacaaggcgagcagatcttcggcgacggcgtcctggaggtcctgcccgac
ggcttcggtttcctgcgctcgcccgagacctcgtatctggccagcaccgacgacatctat
atctcgccgtcgcagatccgacgtttcaacctgcacaccggcgactccatcgaaggtgaa
gtccgcacgcccaaggatggcgagcgctacttcgcgctggtcaaggtagacaaggtcaac
ggcgtgacgcccgagaccatcaagcatcgcatcatgttcgagaacctgacgccgctgcac
ccgaaccgggtcatgcgtctggaacgcgacatcaagagcgaagaaaacctgaccggccgc
atcctcgacgtgtttgcgcccatcggcaagggccagcgcggcctgatcgtcgcaccgccc
aagtcgggcaagacggtgatgatgcagcacatcgcgcatgccatcacgaccaactatccg
gacgccgtcatgatcgtcctgctggttgacgagcgccccgaggaagtcaccgaaatgcag
cgcaccgtgcgcggcgaagtggtggcctcgaccttcgacgagccggccacccgccacgtg
caggtcgccgagatggtgatcgagaaggccaagcgtctggtcgaaatgaagaaggacgtg
atcatcctgctggactcgatcacccgtctggcgcgcgcctacaacaccgtggtgcccgct
tccggcaaggtgctgaccggtggcgtggacgccaacgccctgcaacgcccgaagcgattc
ttcggcgccgcgcgcaacctcgaagaaggcggttcgctgaccatcctgggcacggcactg
atcgaaaccggcagccgcatggatgaagtcatctatgaagagttcaagggcaccggcaac
tccgaagtccacctggagcgccgcctggccgagaagcgcgtctacccggccatcaacctg
aacaagtcgggcacccgccgcgaagagctgctgatcaagcccgaactgctgcagaaggtg
tgggtgctgcgcaagttcatccacgatatggacgaagtccagtcgatggagttcatcctc
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaaataa
DBGET
integrated database retrieval system
