Kyrpidia tusciae: Btus_0074
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Entry
Btus_0074 CDS
T01220
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bts
Kyrpidia tusciae
Pathway
bts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Btus_0074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bts03400
]
Btus_0074
Enzymes [BR:
bts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Btus_0074
DNA repair and recombination proteins [BR:
bts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Btus_0074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_30
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADG04852
UniProt:
D5WRJ1
LinkDB
All DBs
Position
67994..71518
Genome browser
AA seq
1174 aa
AA seq
DB search
MERLIQYVSEHPGFRTLVEGLDERVEEQWVTGLSGTAAHVMMAALRRETGRPMLVVTHNL
QEAQQLYDDCLEFLPSDRVLLFPEREAALLDVAAYSPELAAERMDVLTRLAKGENILLIT
PARAVDQPLPDLEIFRSFLLSLKTGEVLKRDEWVDRLLQMGYEAADRVEARGQFAVRGGI
VDVFPLTQERAYRIEFFDDEIDAIRVFDPETQRSVDQVPACEIGPNTEILAPKERIQAAA
RVVRSQWERQREKFADEGHRERVDRYIGEDVRRMEAGHPFTGLLRYIHLLYPHPGGLLTW
LPAEALCVYAEPVRIRDSLKQREREEQEWELHGLEKGELLPGLHRPAITGDAGLSGHRQR
VLFSLLARHTAATRRMIPVAARSMQQFHGQMNVLKQEWDRWGRTGQRVVLVAANAERAER
LRRVLEDYGMSADLTSEWSKQAHRPQIVLGGISSGFEMPDLRLVVVTEQEIFTAKRRHHR
VSTVSDAERIKNYQDLKVGDYVVHVNHGIGQYMGIQTLEIEGIHKDYLYIRYAGNDKLYV
PIDQIDQVQKYIGGEDKQPKLYHLGGTEWAKVKNRVRSSIRDIAEELVKLYAQRMASPGH
AFSPDTPWQKEFEAMFPYRETPDQLKAIEEIKRDMEQPRPMDRLLCGDVGYGKTEVAMRA
AFKAVMDGKQVAVLVPTTVLAQQHYETFRERFQGFPISIDVVSRFRTRGEMSQVLKQLRA
GTVDIIIGTHRLLQKDVKFKDLGLLIVDEEQRFGVTHKERLKQLKTNVDCLTLTATPIPR
TLHMSMLGVRDLSIIETPPENRFPVQTYVLEYDDLLAKEAIEREIGRGGQVYFLYNKVQD
IEQMADHVRRLVPDAKVAVAHGQMPEDHLELVMLEFLHGEHDVLVTTTIIETGLDIPNVN
TLIVYDADHLGLSQLYQLRGRVGRSSRIAYAYFTYQPEKVLTEVAEKRLQAIKEFTELGS
GFKIALRDLSIRGAGNLLGPEQHGFIASVGFDLYSDMLADAIRELKGESLPQVVEPQVEL
AVDAYLPERYIPDSMQKIEIYKKFVSCRRLEDVDDLQEEIEDRFGDIPQEVLNLLAVTRI
KIWAIRHDFKSISQQGSEVTLKLHERQNKHIQGDRLFDLTKRFRERIKLTAGQNITMTLR
MRGLTAQQSLKLLLEFMEAFQDVVKGQEELQNVL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgattgatccaatatgtttccgaacatccgggattccgaacactggtggagggt
ctggatgagcgggtagaagagcaatgggtcacggggctgtccgggacggcggcgcacgtc
atgatggccgcgctgcgacgggaaaccggcaggccgatgctcgtcgttacccataatctt
caggaagcacaacagttgtatgatgattgtcttgaatttcttccgagcgaccgcgttctc
ctgtttcccgaacgcgaggcggcgctgctcgatgtggcggcttacagtccggaactcgcg
gccgagcgcatggacgttttgacgcgattggccaaaggagaaaacattttgttgatcact
ccggcccgggccgtggaccagccccttccggatctcgaaatattccgttccttcctcctg
tctttaaagaccggggaagttttaaaaagggatgaatgggtggatcggctccttcagatg
ggatatgaagccgccgatcgagttgaagcgcggggacaatttgcagtccggggcggcatc
gtcgatgtttttcccctcacgcaagaacgcgcttacaggatcgaatttttcgacgacgag
atcgatgccattcgggtgtttgacccagaaacccagcgctccgtcgatcaagtgcccgcc
tgcgagatcggaccgaatactgagattctggccccgaaagagcgaattcaagcggcggcc
cgggtcgtgagaagccagtgggagcgacagcgggagaaatttgccgacgaaggccatcga
gaacgagtggaccggtatatcggggaagacgtccggcgcatggaggccggccaccctttt
accggcttgctccgttacatccatctcctgtatccgcatccagggggacttttaacctgg
ctgcccgccgaggcactctgcgtctacgcggaacccgtccggattcgggacagcctgaag
caacgggagcgcgaggaacaggagtgggaactgcacggcctggaaaagggcgagttgctc
cctggactccaccgtcctgccataacgggggatgccggtctctcagggcaccggcaaagg
gtattattctccttgctcgcccggcacacggccgccacccggcgcatgattccggtggcc
gcccggtccatgcagcagttccacggccagatgaacgtcttgaaacaagaatgggaccgg
tgggggcgaacgggccagcgagtggtcctggtggcagcgaacgcagaacgggctgagcgg
ttgcggcgagtactggaagactatggcatgtcggcagatctgacttccgaatggtcaaaa
caggcccaccgaccacaaatagtcctgggcggaatttcgtctgggttcgagatgccagat
ctcaggttggtcgtggtgacggagcaggagatttttacggctaaacgtcgacatcaccgg
gtgtccaccgtctcggatgccgaaagaattaagaattaccaggacctgaaagtcggtgat
tacgtggttcacgtgaaccacggcatcgggcagtacatgggaatccaaaccttggagatt
gaagggattcacaaggattatctgtacattcggtatgccggaaatgacaagttgtatgta
ccgatcgatcaaatcgatcaagtgcaaaaatacatcggcggcgaagacaaacagccgaaa
ttgtatcatctcggcggaaccgagtgggccaaggtcaaaaaccgggtccgttcctccatc
cgggatatcgcagaagaactggtcaaactctatgctcagcgcatggcttcgcccggccac
gccttctctccggatacgccctggcagaaagagtttgaagcaatgttcccataccgggag
acgccggatcaactcaaggccatcgaagagattaagcgggatatggagcagcctcgaccc
atggaccgactgctctgcggggatgtcggttacgggaaaacggaagtcgccatgcgcgcc
gcgtttaaagctgtgatggatggtaagcaggtggccgtgctcgtgcccacgacggtgctt
gcccagcaacattacgaaacgtttcgggagcgtttccaaggttttccgatctccattgat
gtggtcagccggtttcgcacccgcggcgaaatgagccaggtcttgaaacaattgcgagca
ggcaccgtcgacatcatcatcggtacccatcgactcctgcaaaaagacgtgaaattcaag
gacttgggtctcctgattgtggatgaagaacaacgtttcggcgttacgcataaagaaagg
ctcaagcaactcaagaccaacgtggactgcctgaccctcaccgcgacgccgattccccgg
actcttcacatgtccatgctgggagtgcgggatctgtcgattatcgagactccgccggaa
aatcggttcccggtccagacctacgtgttggagtatgacgacttactggctaaagaggcg
atcgaacgggaaattggccgaggcgggcaagtatattttttgtacaacaaagtgcaggac
attgaacaaatggcagatcacgtgagacgtttggtcccggatgccaaggtggcggtggcc
cacgggcagatgccggaagatcacctcgaactggtgatgctggagtttttgcatggagaa
cacgatgttctcgtgaccaccaccattatcgagacgggcttggacattccaaacgttaac
acgctcattgtttacgatgccgatcatctcggactgtcgcagctttatcaactccgaggc
cgagtcgggcgatcgagccggattgcgtatgcgtatttcacctatcagcccgaaaaggtg
ctgaccgaagtggcggaaaaaaggcttcaagcgatcaaggagtttacggaactgggcagc
gggtttaaaatcgccctcagggacctgtccatccgaggggccgggaacctattggggcct
gaacagcacgggtttatcgcatcggtggggtttgacctctacagcgatatgctcgccgat
gcgattcgagagctcaaaggtgaatccttacctcaagtggtggaacctcaagtggaactg
gctgtggatgcctatttgcccgagcggtacatcccggattccatgcagaagatcgagatt
tacaagaaattcgtgtcgtgtcggcggctggaggatgtcgacgatctccaggaagagatc
gaagaccgctttggggatattccccaagaggtccttaacctattggcggtgacccgcatc
aagatctgggcgatacggcatgatttcaagtcgatttcccagcagggcagtgaggtcacg
ttaaagctgcatgagagacaaaacaagcacatccagggcgaccgactgtttgacctgacc
aagcggttccgggagcggatcaagctcaccgcagggcagaacatcaccatgacgttgcgc
atgcgggggttgacggcgcaacagtcgttgaaattgctcctggagttcatggaggcgttt
caagacgttgtcaaagggcaggaggaactgcaaaatgtcttatag
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integrated database retrieval system
