KEGG   Borreliella turdi: QIA31_02425
Entry
QIA31_02425       CDS       T09185                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
btud  Borreliella turdi
Pathway
btud03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:btud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    QIA31_02425 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:btud03021]
    QIA31_02425 (rpoC)
   03400 DNA repair and recombination proteins [BR:btud03400]
    QIA31_02425 (rpoC)
Enzymes [BR:btud01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     QIA31_02425 (rpoC)
Transcription machinery [BR:btud03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     QIA31_02425 (rpoC)
DNA repair and recombination proteins [BR:btud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      QIA31_02425 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: WKC77949
LinkDB
Position
complement(396459..400592)
AA seq 1377 aa
MKEIKDFEKIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYTEARERYGMSFNASMGAEAVKTLLE
NLDLDGLSSKLRVQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDVLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPSAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNTAGEGKKFLNFSNVILAINNRSLDYNASIYVK
IDGEYKKTTAGRVVFNEALPNGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFRYATKFGCTISMSDIIVPDEKKAYVDRANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
GKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNSIEGFNVNVDNGILFTRKGTLKIINVFYEEKIKNIKEI
KVLDSQRVIKGILLFVNKKGVEIFSSYIGYIKLRDDKFLIVSEEQEVILKAGTKLEIGVG
DYVESGKVIGTFDPFAEPIIAEVRGKIKFKDIILGTTLKEEINTETGNIEKRITDNVFES
LDPRIFIIDSSGMEVASYVLPGDAYLQVEDGQNINIGDVIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
IVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKVDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENIDSEV
NT seq 4134 nt   +upstreamnt  +downstreamnt
atgaaagagataaaagattttgaaaaaataaaaattaagatagcatctcctgaccaaatt
agaaattggtcttatggagaggttaaaaagtctgagactattaattatagaactttgaga
cccgagaaggatgggcttttttgtgaaagaatttttggtactacaaaggaatgggaatgc
tattgcggtaaattcaagtcagttagatataagggtattatttgtgatcgttgtaatgta
gaggttactcattttaaggtgagacgtgaaagaatggggcatattgaactagcagctcca
gttgctcatatttggtattacaaatatataccctctagaattggtcttttgcttgacatt
acagcatctagtttaaattctattctttattatgaaaaatatgtagtaattgaaccaggt
gatactgatcttaaaaaaatgcaacttttaaatgaagatgagtatacagaggctagagag
cgatatggaatgtcttttaatgcttcgatgggagctgaagctgttaaaactcttcttgaa
aatcttgatcttgatgggctttcatctaagcttagggttcaaatgatagacaaagatgat
aaaactgataaaaaactcttaagacgtcttgaaattattgaaaattttaaaatttctggg
aataagccagaatggatgattatggaagttctccctgttattccccctgagattaggcca
atggttcagcttgatggagggcgctttgcaacatctgatcttaatgatctttatagaaga
gttataaacaggaataatcgtttaaggaagttgcttcttcttaatgcgccagagattatt
gtgagaaacgaaaaaagaatgcttcaagaatcggtggattctctttttgacaattcacat
aaacgaaaggttgtcaaaggatcatcgagtaggcccctcaagtcgctttctgatgtttta
aaaggtaagcaaggaaggtttagacaaaatcttcttggtaaaagagtggattattctggt
cgttctgtgattgttgttggacctgagttaaagctccatcaatgtggattgcctgcaaaa
atggctcttgagctttttaagccttttgtgataagaaggttaattgaaagtgaggctgtg
tttaatatcaaaagagcaaagaatttaatcgaacaagaagttgacgaggtatggcaaatt
ttagatcttgttatcaaagagcatcctattcttttaaatagagcacctactcttcataga
cttggaatacaagcttttgagcccgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggtgatcaaatggcagtgcatgtgcct
cttactccatcagcgcaagctgaaagctgggctttaatgctttcaacaaataatctttta
aatcctgctaatggacatcctattgtttttccatctcaagatattgttttgggcctatat
tatttaacaatggaaaaaaagaatactgctggagaaggtaaaaagtttttaaactttagc
aatgttattcttgctataaataatagaagtctagattataatgcttctatttatgtaaaa
attgatggtgaatacaaaaaaactacagccggtagggttgtatttaatgaagctttgcct
aatggaattgaatttgtaaacaaaactcttagtgatttggaactacaaattttaatatca
aaagtttatgtagttcatggttcttctactgtaattgaaatgcttgatattattaaggag
cttgggtttaggtacgctactaagtttggatgtacaattagtatgagtgatattattgtt
cctgatgaaaaaaaagcttatgtggatagggctaataaagagattgctaaaattcaaaat
gattatgccaaaggtgttattactggtgaagagcgttataataatgtagtttctgtttgg
ttaaagacaaacgaagaacttactaataaaatgatggaaattttaaagaaggatagagat
ggatttaatgttatatatatgatggcagattctggtgctaggggcagtagaaatcaaata
aggcaacttgctggtatgagaggattgatggcaaaaacttctggggatattattgagctt
ccaattatttccaactttaaagaaggtctttctgtaatagagttttttatatctacaaat
ggagctagaaagggcctagcagatactgcgcttaagacagctgatgctggatatttaacc
cgaagattagtagatattgctcaagatgttgttgttagaatagaagattgtgggactata
aacggaataaaagttgaaactgtaaaaaatggcgaagaaatattggaatctttaaaagaa
aaagctgttgggagttattctattgaaagaataaaaaatccaattactggtgagattgtt
ttagatgcaaatgaagaaatatcagaagctaaaatagaattattagaaaaaattggtatt
ggaaaacttgtgattagatctgttttaacatgtgaagctgaacatggtgtttgtcaaaaa
tgttatggtagagacttttcaaagaacaaacctgttaacattggtgaggctgtaggaata
attgctgctcagtctataggccaaccaggtactcaattgaccatgagaacttttcacatt
ggtggggttgctcaggctggtagtgaagatgataaaatatctttaaagaatgcttttata
cttaatagcatagaaggttttaatgttaatgttgacaatggaattctttttacaagaaag
ggaactttaaaaataattaatgttttttatgaggaaaaaattaagaacataaaagaaatt
aaagttttagattctcaaagggtaatcaaagggattcttttgtttgttaataaaaagggt
gtagagattttctcttcttatattgggtatattaaattaagagacgataaatttttaata
gtatcagaagagcaagaagttatcttgaaagctggtacaaagcttgaaataggggttggt
gattatgttgaatctggcaaggttattggtacatttgatccatttgcagagcctattatt
gcagaggttaggggtaaaattaaatttaaggatattattttaggaaccactcttaaagag
gaaataaacactgaaacaggtaatattgagaaaagaattacggataatgtttttgaatct
cttgatcctagaatttttattattgatagtagtggtatggaggtcgcatcttatgtatta
ccaggtgatgcttatcttcaagttgaagatggtcagaatattaatataggagatgttatt
gctaaactttctaaaggctctgaaaaaactcaagatattacagggggattgcctcgtgtt
aatgatctttttgaaacaagaattcctaagaatttaactgaaatggctaaagtaagtggg
attgtgcaatttaaatcaattcaaaaaggtaaaagacttattaatattttagatgagtac
ggggttgagcataagcattatattccggccggtaagcatcttttggttagagatggagat
attgttaaggcaggcgatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attctaggtgggattagtttgcaagagtttttgttggcagaaattcaggatgtttatcga
aaacagggtgttagtattaatgacaaacatattggtgtgataattaaacaaatgatgaaa
aaggttaaaattgtagcagttggtgatactaattttgtttatgggcaaaaggtagataag
catactttttatgagcaaaatagaaaagtaatcgaacaaggtggtgagccagcaatagca
agtccaattcttataggagtaactaaaacgtcccttaatatagattcttttatttccgcg
gcttctttccaggaaacaactaaagtattaacagatgcttctattgccggaaaagtagat
gatcttaggggattgaaagaaaatgttgtaattggacatttaattcctactggaactggt
atgggactttataaaaaaattaaagttagcgaaaatatcgattctgaagtttaa

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