Borrelia turcica: DB313_03265
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Entry
DB313_03265 CDS
T05670
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btur
Borrelia turcica
Pathway
btur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DB313_03265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btur03400
]
DB313_03265 (mfd)
Enzymes [BR:
btur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DB313_03265 (mfd)
DNA repair and recombination proteins [BR:
btur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DB313_03265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
UB2H
Cas3-like_C_2
DUF4191
TsaE
Motif
Other DBs
NCBI-ProteinID:
AYE36477
UniProt:
A0A386PNK9
LinkDB
All DBs
Position
complement(675377..678742)
Genome browser
AA seq
1121 aa
AA seq
DB search
MNIEKELTANLKDNNDFKKIKQFIEQKIPFTLIGYEGFFKAFLLNKIKEYSKSKSAILIV
KNENILDEIKADLMQITDKIYELNYFSSLVYKGISSQSKVFSERVKFLINFYENNPGIYV
VSIKSLLSKIPNKKNLLKNIYKLQKEKIINIKTFEKKLTKLGYEQTTRVTLPGEFTIKGE
VIDIYSFDKTEPIRISLNSDKIEEIKAFNPFTQLKEGNELSGFEIIPKKEIIWDDLNINK
LRQQIKENEHKELFEDIKTKHNAKTEEIFYSLIGDTYLSQEIKKDTPIINFELSNFQEEI
KKIHKEHEKLYSQAIEAGRKTIAPKEIFINPKDLKLETNIFFSSPENVQTEEFIEFQIES
ERCFFSNIILAKNEINNWLKDGFRVIIAAESRSQKEKLKYLFKDLPKIKIEVLKISSSLI
INTEKIAIILESDIFNRKQKINKDFESSKTKIIDSFVEVEKNSHVVHINHGIGIFRQVKR
IKTSFLEKDYIEIEYADNEKLFIPIEQTHLIQKYIGNNTQNIKLDKISSKTWEKKKAYTK
KRIDEIADKLVSLYSERESIKGFKYPKDNEWQLLFESEFPYDETPDQLTAIEEIKKDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMSKKQVAILSPTTILTEQHFNTFKRRFKNFPI
KIAMMSRFIKKSKEREIIKKLALGEIDIIIGTHKILSKNLIYKDLGLIIIDEEQRFGVRE
KEKLKEIKVSVDCLSLSATPIPRSLHMSLIKLRDISVLKIPPKNRIKIETYVEEFNEALI
KHAIENELSRDGQVFFVHHNIKELDSIKVILEKIIPYARIATIHAKLTGDQIENIMHDFI
NKSYQILLATTIIENGIDIENANTIIINNANRFGLSQLYQLKGRVGRSSQKAFAYLLYKE
NSSLNENAIERLRSISEFSDLGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYSTM
LNKAIEQRMGKSSQENEITIEINYNGFIPDSYVDNEQDKILIYKKISGIQSEEENKKIRA
EIYDRFGSIPKELNTLLTLAEIKTLAKKFNILSLKERNELLEIEYSNTESIPIKKVMEII
KDNPTTLKINPKYQNSIFLNLNNNKESDKINYIYKNLNLLL
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaattaactgctaatctaaaagataataatgattttaaaaaaata
aaacaattcatcgaacaaaaaataccatttacattaatagggtatgaaggattttttaag
gctttcttactaaacaaaataaaagaatacagcaaaagcaaaagtgctattctaatagtt
aaaaatgaaaacatcttagacgaaatcaaagctgatttaatgcaaatcacagataaaata
tacgaactaaactacttcagttcccttgtatacaaagggatcagttcacaaagtaaagtc
tttagtgaacgagtaaaattcttaataaacttttatgaaaacaatcctggtatctatgtt
gtctcaataaagtctcttcttagcaaaattcccaataaaaaaaatttacttaaaaacatc
tataaacttcagaaagaaaagataataaacataaaaacatttgaaaaaaaacttacaaag
ctaggctatgaacaaacaacaagagttacactacctggagaatttacaataaagggagaa
gtaatagatatatactcatttgacaagacagaaccaataagaatttctctaaattctgac
aaaatagaagaaataaaagcatttaatccttttactcaactaaaagaaggaaatgaactt
tctggatttgaaatcatacctaagaaggaaattatatgggacgatttaaacataaacaaa
ttaaggcaacaaataaaagaaaatgaacataaagaattatttgaagatattaaaacaaaa
cataatgcaaagacagaagaaattttttattcattaataggagatacatacttaagtcaa
gaaataaagaaagatactcctattattaacttcgagctctcaaactttcaagaagagata
aaaaaaattcataaagaacatgaaaagctttacagtcaagcaatagaagcgggcaggaaa
acaattgcaccaaaagaaattttcatcaatccaaaagatttaaaattagaaaccaatatt
ttcttctcaagccctgaaaatgttcaaacagaagaattcatagaatttcaaattgaaagc
gagcgttgttttttttcaaacattatacttgcaaaaaacgaaataaataactggctaaaa
gacgggtttagagtaatcattgcagcagaatctaggtcacaaaaagaaaaactaaaatat
ctcttcaaagaccttccaaaaataaaaattgaggttctaaaaatatctagttcccttata
attaacacagaaaaaatagccattattcttgaatctgatatatttaatagaaaacaaaaa
ataaataaagattttgaatcatcaaaaacaaaaattattgattcatttgttgaagttgaa
aaaaatagtcatgttgtacatataaatcatggaattgggatattcaggcaggtaaaaaga
ataaaaacaagtttccttgaaaaagactacattgaaattgaatatgccgataatgagaaa
ttatttatcccaattgaacaaacacatcttattcaaaaatatattggaaataatactcaa
aacataaaattagataaaattagttcaaaaacatgggaaaagaaaaaagcttatacaaaa
aaaagaattgatgaaatagcagataaacttgtctcactttattccgaaagagaaagcatt
aaaggatttaagtatcctaaagataacgaatggcaattattatttgagtcagaatttcca
tatgatgaaaccccagatcaattaactgcaatagaagaaatcaaaaaagacatgatgagc
tttaaagtaatggatagacttttatgcggtgatgttggctttggtaaaactgaggtagca
atgagagcagcatttaaagctgtaatgagtaagaaacaagtagcaatactttctccaaca
acaattctaacagaacaacactttaatacatttaaacgaagatttaaaaattttccaatc
aaaattgcaatgatgagcagatttataaaaaaatcaaaagaaagagaaattattaagaaa
ctagctttaggagaaattgacataataattggaacacacaaaatactatctaagaactta
atatataaagacttaggactcatcataattgatgaggagcaaagatttggggttagagaa
aaagaaaaactaaaagaaatcaaggtgtctgttgactgcctctcgctatcagcaactcca
attccaagatctcttcatatgtcattaatcaaactaagagacatctctgttttaaaaatt
ccacccaaaaatagaattaaaatagaaacttatgtagaagaatttaacgaagctttaatt
aaacatgcaattgaaaatgaactttcccgagacgggcaagtcttctttgtacatcataat
attaaagaactagactcaataaaagtcattttagaaaaaataatcccctatgcaagaata
gcaaccattcatgcaaagcttactggtgaccaaattgaaaatattatgcatgattttata
aacaaatcataccaaatactcctagcaacaacaataattgagaatggaatcgacattgaa
aatgcaaatacaataataattaacaatgctaatagattcggtctctctcaactataccaa
ctaaagggaagagtaggaagaagctcacaaaaagcttttgcttatcttttatataaagaa
aactcaagtttaaatgaaaatgctattgaaagattacggtcaatatctgaattttcagat
ctaggagccggatttaaaatcgcaatgaaagacatggaaataagaggtgttgggaattta
cttggaagagaacaacatggagaaattgaatctattggactagattattattcaacaatg
ctaaacaaagcaattgaacagagaatgggcaagagttctcaggaaaacgaaatcactatt
gaaattaactataatggattcattcccgatagctatgtagataacgagcaagataagata
ttaatttataaaaaaatctcaggaattcagagtgaggaagaaaataaaaaaataagagct
gaaatttatgaccgatttgggtccattcctaaagaattaaataccctacttacactagca
gaaataaaaacacttgcaaaaaagtttaatatcttaagtcttaaagaaagaaatgaatta
ctagaaattgaatattcaaacacagaaagcattcctatcaaaaaagtgatggaaatcata
aaagacaatcctaccacactcaaaataaatccaaaatatcaaaactcaatttttctaaat
cttaataataataaagaatcagataaaattaactacatatacaagaatctaaacttatta
ttataa
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