Burkholderia thailandensis MSMB59: BTHA_1925
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Entry
BTHA_1925 CDS
T03416
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btv
Burkholderia thailandensis MSMB59
Pathway
btv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTHA_1925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btv03400
]
BTHA_1925 (mfd)
Enzymes [BR:
btv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTHA_1925 (mfd)
DNA repair and recombination proteins [BR:
btv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTHA_1925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIS95825
LinkDB
All DBs
Position
1:complement(2095816..2099289)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDNASPSQSPVALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQ
RLAQELRYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATT
ALYRMPPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLF
PMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWR
ETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPENAQLVFTGDLDAAIK
RFTADTKQRYAFLSHDRERPILEPQRLFLSDDDFYLLAKPFARIVLPAQPSGGWAAPLPN
LALDRHADAPLAAFAAYLETTNNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAAWLE
TDERFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSEL
KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSGADP
DSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFADSF
GFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSP
TTLLAEQHTQTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSD
VQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA
TAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVPEAR
IVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE
VLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYC
GDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIMK
IDASEAAIGLQFVPNPPIDPMRIIDMVQKHRHIKLAGQDKLRIETRTPDLVVRVSTVKET
LRALGQPQQSRAQAAAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaacgcctccccttcgcagtcccccgtcgcgctcgtcaaggcgggccagcgc
ttcgcgttcgacggagcgcacggctccgccgacgcgctcgtcatcgcccgctatctcgcc
gcgcaccgcgcgcaggtgccgcttctcgccgtgatctgcgcgaacgcggtcgacgcgcag
cggctcgcgcaggaactgcgctacttcgcgcccgacgcgcgcgtgcgcgtgctgcccgac
tgggagacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcgtctc
gcgacgctgcacgacctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacgaca
gcgctctaccggatgccgcccgcatcgttcctcgccgcgtacacgttcgcgttcacgcag
ggcgagcggctcgacgaggcgaagctgaaggcgcaattgacgctcgccggctacgagcac
gtgagccaggtcgtgcgtcccggcgaatactgcgtgcgcggctcgctgatcgacctgttc
ccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcgatc
cgcgcgttcgatccggacacgcagcgcagcctctacccggtgcgagacgtgcgcctgctg
cccggccgcgagttcccgttcgacgaggcggcgcgcaccgcgttcagaagccgctggcgc
gagacgttcgagggcgacccgagccgcgcgccgatctacaaggacatcggcaacggcgtg
ccgtcggccggcatcgaatactatctgccgctcttcttcgacgagacggcgacgctgttc
cactacctgcccgagaacgcgcagctcgtgttcacgggcgacctcgacgcggcgatcaag
cgcttcacggccgacacgaagcagcgctacgcgttcctgtcgcacgatcgcgagcggccg
atcctcgagccgcagcgcctgttcctgtccgacgacgatttctatctgctcgcgaagccg
ttcgcacggatcgtgctgcccgcgcagccgtcgggcggctgggccgcgccgctgccgaat
ctcgcgctcgaccgccacgcggacgcgccgctcgccgcattcgccgcgtacctggagaca
acgaacaaccgcgtgctcttcaccgtcgaatcggccggccgccgcgagacgatcgcgcag
ctgttcgccgagcatcacctgcggcccgcgggcagcgacagcttcgccgcgtggctcgag
accgacgagcgcttcgcactcggcgtagcgcccctcgcaagcggcttcgcggtgccgggc
gaaggctacgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgccgga
cgccgccgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtccgagctg
aaggtaggcgacccggtcgtccatgcgcagcacgggatcggccgctacatggggctcgtg
tcgatggatctcggcgaaggcgacaccgagttcctgcatctcgaatacgcgggcgacagc
aagctgtacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgcggacccg
gacagcgcgccgctgcacgcgctcggctcgggccagtgggagcgcgcgaagcgccgcgcc
gcccagcagatccgcgataccgccgccgagctgttgaacctctatgcgcggcgcgcggcg
cgcgagggccacgcgttcgcgctcgatccgcgcgactacgtgaagttcgccgacagcttc
ggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatgacg
agcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaggtc
gcgctgcgcgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcgccg
acgacgctgctcgccgagcagcacacgcagaccttcatcgaccgcttcgccgactggccc
gtgaaaatcgtcgagctgtcgcgcttcaagtcgacgaaggaagtgaacgcggcgatccag
cagatcaacgacggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcggac
gtgcagttcaagcggctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtgcgc
cagaaggaagcgctgaaggcgctgcgcgcggaggtggacgtgctcacgctcaccgcgacg
ccgatcccgcgcacgctcggcatggcgctcgagggcctgcgcgacttctcggtgatcgcg
accgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagcgtg
atccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcacaac
gaggtcgagacgatcgagaaccgccgcgcgatgctcgaggaactggtgcccgaggcgcgg
atcgtgatcgcgcacggccagatgcacgagcgcgaactcgagcgcgtgatgcgcgatttc
gtcgcccagcgtgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgacgtg
ccgagcgcgaacaccatcatcatgcaccgcgcggacaagttcggtctcgcgcagttgcac
cagttgcgcggccgcgtcggccgctcgcaccatcaggcgtacgcgtacctgctcgtgcac
gatccgcaggcgctcacgaagcaggcgcagcggcggctcgaggcgatccagcagatggag
gagctcggctcgggcttctacctcgcgatgcacgacctcgagatccgcggcacgggcgag
gtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacaccgag
atgctgaacgacgcggtgaaggcgttgaagaacggcaaggagccggacctcaccgcgccg
ctcgccgcgacgaccgagatcaacctgcatgcgcccgcgatcctgcccgccgattactgc
ggcgacgtgcaggaacggctgtcgctgtacaagcggctcgcgaactgcgagcacggcgat
gcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcaggcg
cacgcgctcgtcgagacgcaccggctgcggctcgccgcgaagccgctcggcatcatgaag
atcgacgcgagcgaggcggcgatcgggctgcagttcgtgccgaatccgccgatcgatccg
atgcggatcatcgacatggtgcagaagcaccggcacatcaagctcgcgggccaggacaag
ctgcggatcgagacgcgcacgccggacctcgtggtgcgcgtgtcgacggtgaaggaaacg
ctgcgcgcgctcggtcagcctcagcagtcgcgcgcgcaggcggcggcgcggtag
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integrated database retrieval system
