Bartonella tribocorum BM1374166: BM1374166_01131
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Entry
BM1374166_01131 CDS
T03233
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
btx
Bartonella tribocorum BM1374166
Pathway
btx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
btx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BM1374166_01131 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
btx03400
]
BM1374166_01131 (mfd)
Enzymes [BR:
btx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BM1374166_01131 (mfd)
DNA repair and recombination proteins [BR:
btx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BM1374166_01131 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
AAA_16
DUF7102
Motif
Other DBs
NCBI-ProteinID:
CDO48812
LinkDB
All DBs
Position
complement(1281872..1285372)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSIFKKIVIPQNNSVHMIFDGVTDGFEAFALAQLSSEIAQGKPLIYVVRDGTKISHLRQV
LNFIEPNLPVLQFPAWDCLPYDRVSPGIAIMARRLSALARMANLRQNPHPAIILTTANAI
MQKLPPREMIEAQLIHAHVGQRHNMGHFIQFLETNGFERVTVVRDVGEFAVRGGILDIFS
PMDVEPLRLDFFGDTLESIRVFDPESQRTTRQKTELLLQAMSEVVLTPERISRFKSNYTR
TFGISQKNTMLYEAIAQGRRFAGMEHWLPFFYEHLDTFFDHCGNLPLVFEHLIEEVFIER
YRLVEDYYNARKERENDKENTTSYHPIDPSLLYLTPERVLECVKQSSQRIDFSPFNIPQS
LEQTVIHTNVKQGYDFIKERNAQEKNVFSSVIDHIASLRAAGKKVLLACWSEGSLNRLVQ
VLDEHGLKKIDVVKSLQTVKATPRDRILAAVIMIEHGFEAEDLAIIAEQDILGDRFIRSP
KRRKNNTNFISEISALNSGDIVVHIDHGIGQFVGLKTITTTGILRDCLEIKYAGGDLLFL
PVENIELLSRYGSEGTEVTLDKLGGVAWQARKARLKKHLLEMAGQLIRIAAERVTRAAPA
LLPPVGLFDEFVACFPYEETEDQINAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFISRFQGLPVKIGHASRLVKTKEIAQVKKGISDG
TIDIVIGTHALLSGAINFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LGLALSGVRELSLITTPPVDRMAVRTFISPFDALVIRETLLREYYRGGQSFYVCPRISDL
AFVEEYLKTHVPELKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLTPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVAELKDGEISEDKQWSPQIS
LGTTVMIPESFVPDLSLRMGLYRRLTEFEDLNQINEFAAELIDRFGPLPLEVQHILKVFH
IKTLCRKAHVEKLDAGPKGIVIQFRNNYFANSMALVQWVGKQGSMAKIRPDQSIALIRDW
TTVDERLIGAATIMTQLVEMAEQHSV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtctatatttaaaaaaattgtcattccccaaaataattctgttcatatgatttttgat
ggcgttactgatgggtttgaagccttcgcccttgctcaattaagttcagaaattgcacaa
ggtaaaccactcatctatgttgttcgagacggaacaaaaatttcgcatttacgacaagtt
ttaaattttattgagccgaatttgccggtacttcaatttcctgcatgggattgtttaccc
tatgatcgcgtgtcaccaggaattgctattatggcacgtcgactatcagcattggcacgc
atggccaatttacgtcaaaatccacatcctgcaattatattaacaacagcaaatgcaatt
atgcaaaagttgcctccccgtgaaatgatagaagctcagcttattcacgcacatgttggc
cagcgccataacatggggcatttcatccaattcttagaaactaatggttttgaacgcgtt
acggttgttcgtgatgttggtgagttcgctgtaagaggaggaatacttgatatcttttct
ccgatggatgttgaacctttacgtcttgatttttttggagatacgttagaaagtattcgc
gtatttgatccagaaagtcaaagaacaacacgccaaaaaactgaacttttattacaagca
atgagtgaagttgttctcacaccagaacgtattagccgttttaaaagcaattatacgcgt
acatttggtatatctcaaaaaaataccatgctttatgaagcaattgctcaaggtcggcgt
tttgctggtatggaacattggcttccatttttttatgaacaccttgatactttttttgac
cattgtggcaatttaccgcttgtttttgaacatcttatagaagaagtcttcattgaacgc
tatcgccttgttgaagactattataacgcgcgtaaagagcgcgaaaatgataaagaaaat
acgacttcttatcatccaatagaccctagtcttctctatttaacgccagagcgtgttttg
gaatgtgtgaaacaatcttcacagcgtattgatttttcgccttttaatattccacaaagt
ttggaacaaacagttattcacaccaatgttaaacagggatatgattttataaaagagcgt
aatgcacaagaaaaaaatgttttttcaagtgttattgatcatatcgcctctttacgcgct
gctggcaaaaaagtacttttagcgtgttggagtgaaggatctctcaatcgtttggtacaa
gttcttgatgagcatggattgaaaaaaatagatgttgtaaaatccttgcaaactgtcaaa
gcaacaccacgagatcgcatattagcagctgttatcatgatagaacatggttttgaggct
gaagatttagctattatagcagagcaagatattttgggcgatcgcttcataagatcacca
aagcggcgtaagaataatacaaattttatttctgagatttctgctttaaattcgggtgat
atcgttgtgcatatcgaccacggtattggccaatttgttggtctaaaaactatcacaacc
accggaattttgcgagattgccttgaaatcaaatatgctggaggtgatttactcttttta
cctgttgaaaatattgagcttctttcacgttatggctcagaaggaacagaggtaacttta
gataaattagggggtgttgcttggcaagcacgtaaagcgcgacttaaaaaacatttgtta
gaaatggcagggcaattaatccgtatagctgcggaacgtgtgacccgtgctgcccctgct
ttacttccaccagttggactatttgatgaatttgttgcatgctttccttatgaagaaaca
gaagatcaaataaacgctattgatgccgttttggatgatttagcctcaggaaagccaatg
gatcgcttgatatgcggtgatgttggctttggaaaaaccgaagtggctattcgaagtgct
tttgttgcagcattaaatggatatcaagttgctgttgttgtaccgacaactttgctttca
cgtcaacattacaagacgtttatttcgcgttttcaaggattaccggttaaaattggtcat
gcttcaaggcttgtaaaaacgaaagaaattgcacaagttaaaaaaggtatttcagatggt
acaatcgatatcgtcattggaacccatgcgttattaagtggtgcaatcaattttttacgg
ttaggtcttcttatcattgatgaggagcaacattttggggtaaaacacaaagagcgttta
aaagagcttaaaagtgatattcacgttcttacactttcagcaacccccataccacgaact
ttaggattggcattatcaggagtccgtgaactttcattaattaccacgccacccgttgat
agaatggcggttcgtacttttatttcaccatttgatgcacttgttatacgcgaaactttg
cttcgagaatattatcgtggtggacaaagtttctatgtttgtcctcgtatttctgatctg
gcttttgtagaagaatatctcaaaacacatgttccagaactcaaatttgttatagctcat
ggacaaatgccggctgggcaacttgatgatattatgaatgcattttacgatggacaatac
gatgttttgctatcaacaaccattattgaatcgggtcttgatattccaacagccaataca
ttaattgtgcatcgcgctgagatgtttggtctttctgcactttaccagttacgaggaagg
gtagggcgctcaaaacaacgtgcttatgcactctttacatttccttctggtaaagtttta
acacctgcagctgatcgtcgtcttaaggtgttacaatctcttgatacattaggggcaggc
tttcaattagcaagccatgatatggatattcgtggttcaggcaattttttaggtgaggaa
caatcaggacatatcaaggaagttggatttgaactttatcaaaaaatgcttgaagaagct
gttgctgaattaaaagatggagagataagtgaggataagcaatggtcccctcaaatttca
cttggtacaaccgtaatgatcccagaaagttttgtgcctgacttatcattacgtatgggg
ctttaccgacgcttgacagaatttgaggatttaaatcagattaatgaattcgcggcagag
ttaattgatcgctttggtcctttaccccttgaagttcaacacatccttaaagtttttcat
atcaaaaccttgtgtcgaaaagctcatgtagaaaaattagatgctggaccaaaaggtata
gttatacagtttcgtaataactatttcgccaatagtatggctcttgttcagtgggtagga
aaacaaggttcaatggcaaaaattcgtccagatcaaagtatcgctcttattcgggattgg
actaccgttgatgaaagacttattggagcagcaacgattatgacacagcttgtagaaatg
gcagaacaacattctgtttaa
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