Bartonella tribocorum BM1374166: BM1374166_01136
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Entry
BM1374166_01136 CDS
T03233
Name
(GenBank) Putative ribonuclease Jc
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
btx
Bartonella tribocorum BM1374166
Pathway
btx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM1374166_01136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btx03019
]
BM1374166_01136
Messenger RNA biogenesis [BR:
btx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM1374166_01136
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
CDO48817
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Position
complement(1289219..1290895)
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AA seq
558 aa
AA seq
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MVATNRCEFVFLPLGGVGEIGMNLAAYGFGSQNLREWLLVDMGVSFAGSELPGVDLILPD
IRFLESEKHNIRGLVLTHAHEDHYGAVLDLWPKLQVPLYCTAFTAGLLESKRQSDFESRK
MSFNIFQAGNCFQVGPFAIEAIAVNHSIPESVSLAITTSLGTVVHTGDWKIDHTPSLGAV
TDEKRFRALGNKGVLALLCDSTNACRDGISPSEQQVQTSLSEIISKAEGRVAIATFASNI
GRIRSIALAAEAAGRKVLIIGRSLKRSIMIAQELGYMDGLAPFVTEDDYGYIPRKELVLI
VTGSQGEPCAALAKLSREGMRNIALSTGDTVIYSSRSIPGNEKAIIEVQNRFIDLGIEVI
TNEDALVHVSGHPRRSELLQMYDWIKPHILVPVHGEAIHLTAQAALARQAGIKVVRDIRN
GNMLRLAPAPVEVIDQVPVGRIYKDGCLLGDEYELGIRERRKLSYAGHVAVSLHMNSKHE
LLDDIGLSMFGLPESNGKGESLKDILLDTVENTVYNIPHMKRKNNELIQEATRRAVRAAV
DEIWQKKPLCTVFLHRSK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaaccaatagatgtgaatttgtttttttacctctgggaggtgtaggtgaaata
ggaatgaatttggcggcttatggatttggctcccaaaatcttcgtgaatggttgcttgtt
gatatgggcgttagttttgctggttctgaattaccaggagttgatcttattctccctgat
attcgttttctagaaagtgaaaaacacaatatacgtggtcttgttttaacacatgcacat
gaagatcattatggggctgttctcgatttatggccaaagttacaagttccactttactgt
acagcttttacggcagggttattggaaagtaaaaggcaatcagattttgaatctcgtaaa
atgtcattcaatatttttcaagcaggcaattgttttcaggttggtccctttgccatagaa
gctattgctgttaaccattcgataccagaatctgtatctttagccattacaacgtctttg
gggactgtggttcatactggtgattggaaaattgatcataccccttcacttggggctgta
acggatgaaaaaagatttcgagctttaggcaataaaggtgttttagcattgctttgtgat
tccacaaacgcgtgtcgggatggtatatctccatcagagcagcaggttcaaaccagtctt
tctgagattatttcgaaagctgaagggcgtgttgcaatagcaacttttgcttctaatatt
ggtcggatacgttctattgctcttgccgctgaagctgctgggcgtaaggtgcttatcatt
gggcgctcccttaagcgaagtattatgattgcacaagagcttggttatatggatgggtta
gcgccatttgtaacggaagatgattatggttacatcccacgaaaagaacttgttttaatt
gtcacagggagccaaggtgagccatgtgctgctttggctaaactgtcacgggagggaatg
aggaatattgcgctttccactggtgatactgttatttattcatcacgaagtattccagga
aacgaaaaagcgattattgaggtacaaaatcgtttcattgatttgggtattgaagttatt
acgaatgaagatgcacttgttcatgtttcaggtcatccccgtcgttcagaacttttacag
atgtatgattggataaagccacacatacttgttcctgtccatggtgaggcgatacatctt
actgctcaagccgctttagcacgtcaagcaggtattaaagttgttagagatattagaaat
ggtaatatgctgcgtcttgcaccagcgcctgtagaagttattgatcaagtgcctgttggc
cgtatttataaggatggctgtcttcttggagatgagtatgagctaggaattcgtgaacgt
agaaaattaagttatgctggtcatgttgctgtttctctccatatgaatagcaaacatgag
ttattagatgatatcggtctaagcatgtttggactccctgagagtaatggaaagggggaa
agtttgaaagacattcttttagatactgtagaaaatacagtttataacatcccacacatg
aaacgaaaaaataatgaacttattcaagaggcaacacgacgtgcagtgagagcggctgtt
gatgaaatttggcaaaaaaaacctctctgtacagtttttttacatcgatcaaaataa
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