KEGG   Burkholderia thailandensis H0587: BTL_2208
Entry
BTL_2208          CDS       T03113                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
btz  Burkholderia thailandensis H0587
Pathway
btz02024  Quorum sensing
btz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:btz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BTL_2208 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BTL_2208 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btz03019]
    BTL_2208 (hfq)
   03036 Chromosome and associated proteins [BR:btz03036]
    BTL_2208 (hfq)
Messenger RNA biogenesis [BR:btz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BTL_2208 (hfq)
Chromosome and associated proteins [BR:btz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BTL_2208 (hfq)
SSDB
Motif
Pfam: Hfq Mucin-like LSM
Other DBs
NCBI-ProteinID: AHI65098
LinkDB
Position
1:2492484..2493143
AA seq 219 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRTGGGGRPGGREGGGHGPYGSHGGPRESRGEGGGYGARESR
GDGGYGSREPRGDGGYGSREPRGDGGYGSREPRGDGGGYGSRESRGDGGYGTREPREPRE
SYGAPQEGASTPSGTQDRNSNGPVIVTRRRRSLGPTDGQ
NT seq 660 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgcctgacgggatgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcctgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcacgtccgggcggccgcggcccgcgc
acgggcggcggcggtcgtcccggcggacgcgaaggcggcggtcacggtccgtacggctcg
cacggcggcccccgcgagtcgcggggtgaaggcggcggctatggcgcccgcgaatcccgt
ggcgacggcggttacggctcccgcgaaccccgtggcgacggcggttatggctcccgcgag
ccccgtggcgacggtggttatggctcccgcgagccccgtggcgacggtggcggttacggc
tcccgcgaatcccgtggcgacggcggatatggcacgcgtgaaccgcgcgagccccgcgag
tcttacggcgcgccgcaagaaggcgcatcgacgccgtccggcacgcaagatcgcaacagc
aacggccccgtgatcgtcacgcgccgccgccgttcgctcggcccgaccgacggtcaataa

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