Burkholderia ubonensis: BW23_2545
Help
Entry
BW23_2545 CDS
T03794
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW23_2545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bub03019
]
BW23_2545
Enzymes [BR:
bub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BW23_2545
Messenger RNA biogenesis [BR:
bub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BW23_2545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJX17219
LinkDB
All DBs
Position
I:2737160..2738623
Genome browser
AA seq
487 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPILQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA
EGDKQAAVVQLLRSRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSL
CSPNERKQLADIEKLIKRPLEVQTLAIDKPARHRHDERGSERGGERGGRRERDEHRGAAG
RRPAGAERGHHRRHEAPIDDFFLKPYEPSASAKQPEEAKPAPHEKKGPKRQVAALLGGFG
MPRKPSA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgtcgccaagccagtcgacgcaaccttcgatcaattcggccttgccgcc
gacatcctgaaagccattgcggagcagggctacacgacgccgacgccgatccaggcgcag
gcgattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggcaccggc
aagaccgcgagcttctcgctgccgatcctccagcgcctgctgccgcaggccaacacgagc
gcatcgcccgcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgagctcgcc
gaccaggtcgccgcgaacgtgcatgcgtacgggaagcacacgccgctgcgcagcgcggtg
gtgttcggcggcgtcgacatgaacccgcagatggccgagctgcgccgcggcgtcgagatc
ctgatcgcgacgccgggccgcctgctcgaccacgtgcagcagaagaccgcgaacctcggg
caggtgcagatgctcgtgctcgacgaggccgaccggatgctcgacatgggcttcctgccg
gatctgcagcgcatcctgaacctgctgccgaaggagcgccagacgctgctgttctcggcg
acgttctcgccggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaggtcgcgcgcagcaactcgacgaacgcgaacgtcacgcagatcgtctacgacgtcgcc
gagggcgacaagcaggcggccgtcgtgcagttgctgcgcagtcgcgggctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccggctcgcgcgcaacctcgagcgcgac
ggcgtggtcgcgtcggcgatccacggcgacaagacgcagatcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgaaatcgaggcgctcgtcgcgaccgacgtggctgcgcgcggc
ctcgacatcgccgagctgccggccgtgatcaacttcgacctgccgttcaatgccgaagac
tacgtgcaccggatcggccgtaccggccgcgcgggtgcgaccggcgatgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgacatcgaaaagctgatcaagcgtccgctc
gaggtgcagacgctggcgatcgacaagccggcgcggcaccgtcacgacgagcgcggcagt
gagcgtggtggcgaacgcggcggccggcgcgagcgcgacgagcatcgcggcgcggcgggg
cgtcgcccggccggcgccgagcgcggccatcatcgccgccacgaggcgccgatcgacgat
ttcttcctgaagccgtacgagccgtcggcgtcggcgaagcagccggaagaggcgaagccc
gcgccgcacgagaaaaaggggccgaagcgtcaggtggctgcgctgctcggcgggttcggg
atgccgcgcaagccgtcggcgtaa
DBGET
integrated database retrieval system
