Burkholderia ubonensis: BW23_2548
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Entry
BW23_2548 CDS
T03794
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03030
DNA replication
bub03430
Mismatch repair
bub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BW23_2548 (dnaE)
03430 Mismatch repair
BW23_2548 (dnaE)
03440 Homologous recombination
BW23_2548 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bub03032
]
BW23_2548 (dnaE)
03400 DNA repair and recombination proteins [BR:
bub03400
]
BW23_2548 (dnaE)
Enzymes [BR:
bub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BW23_2548 (dnaE)
DNA replication proteins [BR:
bub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BW23_2548 (dnaE)
DNA repair and recombination proteins [BR:
bub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BW23_2548 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AJX18160
LinkDB
All DBs
Position
I:2740808..2744341
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARGK
GIKPIAGCDVWIANPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYIELQRYGQPGAE
AYIQQAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLIQLSKE
GLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDAASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAEHRE
IFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAQADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRAGAFDSLNANRAQLLA
SVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKVGELKEGRDKVVAGIIASLRTQMTQRGKMLIALLDDGTGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GSADAAVLRRVLEPHVSKADPAAANAVEAPAPRGGGRDGGRRQQAPLPNGLAVQIHYSNA
RAQGEMRLGEAWRVKPSDTLLAELRAAFSGSVVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgtccatcttcgcgtccactccgaattctcgattgccgacggc
atcgtgcgtctcgacgacatcgtcaaggcggcggccgcggacggccagggcgcgctcgcc
ctcaccgatctcggcaacgcgttcggcctcgtccgtttctacaaggaagcccgcggcaag
ggcatcaagccgatcgccggctgcgacgtctggatcgccaatcccgacgatcgcgacaag
ccgtcgcggctgctgctgctcgtcaaggacaagcgcggctacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagtaccgcggccgcgcggaactcgacgcgagctgg
ctcgacggcgagctcgcgcaagggctgctcgccctgtcgggcgcgcagcagggcgacatc
ggcctcgcgctcgcggccggcaacgaggaggctgcgcgccgtcacgcgcagcgctgggcg
aaggtgttcccgggcggcttctacatcgagctgcaacgctatggccagccgggcgccgag
gcgtacatccagcaggcggcgacgctcgccgcggagctgaagctgccggtcgtcgcgacg
catccgacgcagttcatgaccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatt
tcggaaggcgacatcctcgcgaatccgcgccgccagaagcgtttcacgaccgaccagtac
ttccgcacgcaggacgacatggccgcgctgttcgccgacctgccgtccgcggtcgcgaac
accgtcgagatcgcgaagcgctgcaacctgacgctcgagctcggcaagccgaagctgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctgatccagctgtcgaaggag
gggctcgagaagcgcctcgtgcaattgtatccggacgaagccgaacgcgacgcgcagcgc
gacacgtattacaagcgcctcgaattcgagtgcgggaccatcacgaagatgggcttcccg
ggctacttcctgatcgttgccgacttcatcaactgggcgaagaacaacggcgtgccggtc
gggccgggccggggttcgggcgcgggttcgctcgtcgcctacgcgctcggcatcaccgac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaacccggagcgggtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggagaagtacggcgcggacgcggtgtcgcaaatcgccacgttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaggagccgcagctccaggagcgctacgaccacgaggacgaagtgcaccagctgctcgac
ctcgcgcagcgcgtcgagggcctgacgcgcaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgacttctgcccgctctacacgcagggcgacgacggcggc
gtcgtcagccagtacgacaaggacgacgtcgaagcggtcggcctcgtgaagttcgacttt
ctgggcctcacgacgctgacgatcctcgactgggcggagcgctatatccgccgcctcgat
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatgccgcgtcgttccag
atcctcaagaaggccaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgctgaaggacgcgcagccggaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtcctggcccgatggacctgatcccgagcttctgcgcacgcaagcacggccgcgagaag
gtcgactatccggacccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcg
gacttgctgcgccgcgcgatgggcaagaagaagcccgaggagatggccgagcatcgcgag
atcttcgccgcaggcgccgcgaagaacggcctgtcccgcgagaagtccgacgagatcttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcctacgcg
ctgctcgcgtactacaccgcgtggctgaaggcgcatcatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcgtc
gtgaacaacctggccgtgctgccgccggacatcaaccagtcgcattaccggttcgagccg
gtcgcgcaagccgacggcaagcgctcgcgcacgatccgctacgggctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgcgcgcgcgaggagaagccgttcgcc
gacctgttcgacttctgcgaacggatcgaccggcgcgtcgtgaaccgccgcacgatcgag
gcgctgattcgcgccggtgcgttcgattcgctgaacgcgaaccgtgcgcagctgctcgcg
tcggtgccgctcgcgatggaagcggccgaccaggccgaggcgaatgcgatgcaggcgggc
ctgttcgacatgggcgccgagtcgccgcatgcgcatgcgctcgtcgacgagccggcctgg
gacgacaagcgccgcctgcaggaagagaagggcgcgctcggcttctacctgtccggccac
ctgttcgatgcgtatcgcgacgaggtgcgccggttcgtgcgccagaaggtcggcgagctg
aaggaggggcgcgacaaggtcgtggccggcatcatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgcgagatcacg
atcttcaacgagcagttcgaggcgaacaaggcgctgttcaaggaagacgagctgctgatc
gtgcaggggcaggcgcgcaacgatgcgttcacgggcggcattcgcttcacggccgatacc
gtgatggatctcgagcgtgcgcgcagccgctatgcgcaggccgtgcgcttgacgatgaac
ggcagtgcggatgcagccgtgctgcgtcgcgtgctcgagccgcacgtgtcgaaggccgat
ccggccgcggcgaacgccgtcgaagcgcccgcgccgcgcggcggcgggcgcgacggcggc
cgccggcagcaggcgccgctgccgaacgggctcgcggtccagatccactacagcaatgcg
cgcgcgcaaggcgagatgcgccttggcgaagcgtggcgcgtgaagccgagtgatacgctg
ctggccgagctgcgtgcggcgttcagcggcagcgtggtcgagatcacctactga
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