Burkholderia ubonensis: BW23_2608
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Entry
BW23_2608 CDS
T03794
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW23_2608 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bub03019
]
BW23_2608 (pnp)
03016 Transfer RNA biogenesis [BR:
bub03016
]
BW23_2608 (pnp)
Enzymes [BR:
bub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BW23_2608 (pnp)
Messenger RNA biogenesis [BR:
bub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BW23_2608 (pnp)
Transfer RNA biogenesis [BR:
bub03016
]
Prokaryotic type
tRNA degradation factors
BW23_2608 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AJX16386
LinkDB
All DBs
Position
I:2802701..2804848
Genome browser
AA seq
715 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYIEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLV
VAGTERAVLMVESEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEWDWQPAPK
NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTAAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTNSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQTDTPPQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccagtggggccagcacaaggtgcgcctc
gaaaccggtgaaatcgcccgccaggcgagcggcgccgtgatcgtcgacgtcgaagacacc
gtcgtgctcgcgaccgtcgtcggcgcgaagtcggcgaagccgggccaggatttcttcccg
ctgaccgtcgactacatcgaaaagacctactcggccggcaagatcccgggcggcttcttc
cgccgcgaaggccgtccttcggagcacgagacgctgacgtcgcgcctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtgcaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcatcggcggcgctc
gccgtgtcgggcctgccgttcaacggcccggtcggtgccgcgcgcgtcgcgtacatcgac
aacgcgtacgtgctgaacccgacgcgtgaccagatcaaggcgtcgagcctcgacctcgtc
gtcgcgggtacggaacgcgcggtgctgatggtcgagtcggaagccgaccagctgtcggaa
gacgtgatgctgggcgccgtggtgttcggccacgagcagatgcagatcgcgatcgacgcg
atccacgacctggtgcgcgacggcggcaagcccgagtgggactggcagccggcgccgaag
aacgaggcgctgatcgcacgcgtgaccgagctggcacagaacgacctgctcgccgcttac
cagctccgcgacaagcaggctcgctcggcgaagctgaaggaagtctacgcggcaacctcg
gcaaagctcgaggaagacgcgctggcggccggtacggtcgcggccgacaaggccacggtc
ggcaacgtgctgttcgacatcgaggcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgcatcgacggccgcgacacgcgcaccgtgcgcccgatcgagatccgcaccggcgtg
ctgccgcgcacccacggctcggcgctgttcacgcgcggcgaaacgcaggcgctcgtcgtc
gcgacgctcggcaccaagggtgacgagcagatcatcgacgcgctcgaaggcgagtaccgc
gagcgcttcatgctccactacaacatgcccccgttcgcgaccggcgagacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggccacggccgcctcgcgaagcgcgcgctggtcaag
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtccgaaatcaccgaa
tcgaatggttcgtcgtcgatggcgtcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggtatcgcgatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacattctcggcgacgaagatcacctcggcgacatggacttc
aaggtcgcgggcaccgagcaaggcgtgaccgcgctgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacggcggcggtctccggcgcgaacacgcagctgtcggaattcgcaccg
cgcatgatcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgcgcgctgaccgaggaaaccggcacgacgatcgacatctcggacgacggc
gtcgttacgatcgcgagcacgaacagcgaaggcatggccgaagcgaagaagcgcatcgag
aacatcacggccgagatcgaagtcggccaggtgtacgagggcacggtgctgaagctgctc
gatttcggcgcgatcgtgaacctgctgccgggtaaggacggcctgctgcacatctcggaa
atcgtcaacgagcgcgtgaaggacatcaacgactacctgaaggaaggtcagcaggtcaag
gtcaaggtgatccagacggacgagaagggtcgcgtgcgcctgtcggcgaaggctctcctg
aacgaagcggcggcagcgtcgcaaacggatacgccgccgcagcagtaa
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