Burkholderia ubonensis: BW23_3041
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Entry
BW23_3041 CDS
T03794
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW23_3041 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bub03400
]
BW23_3041 (mfd)
Enzymes [BR:
bub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BW23_3041 (mfd)
DNA repair and recombination proteins [BR:
bub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BW23_3041 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AJX17236
LinkDB
All DBs
Position
I:complement(3264516..3267992)
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AA seq
1158 aa
AA seq
DB search
MPDNASNPFASPVARVKPGQRFAFDGAHGSADALAIARYLADNRHDLPLLAVICANAVDA
QRLAQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDVLVVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
FPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLDAAI
RRFTADTKQRHAFLSHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATGLP
ELTVDRHADDPLAALRTFIDTSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ASDDRFALGVAPLSSGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKMPPQAHALVETHRLRLAAKPLGIT
KIDASEAAIGLQFVPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAVRVSTIKE
TLRALGHSNRQDAAAASR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaacccgttcgcgtcgcccgtcgcacgcgtcaagcccggccag
cgcttcgccttcgacggcgcccacggctccgccgatgcgctcgccattgcccgctatctt
gccgacaaccgccacgacctgccgctgctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcgcctcgcgcaggagatccgctacttctcccccgacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtgtccgagcgg
ctcgccacgctgcacgacctcggcgaaggacgctgcgacgtgctggtcgtgccggcgacg
accgcgctgtaccggatgccgcccgcgtcgttcatggcggcctatacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctcgccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
ttcccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgacccggacacgcagcgcagcctctatccggtgcgcgacgtgcgcctg
ctgccgggccgcgaattcccgttcgacgaggccgcgcgcaccgcgttccgcagccgctgg
cgcgagaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtactacctgccgctgttcttcgacgaaacggcgacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcacgggcgacctcgacgcggcgatc
cgccgcttcaccgccgacacgaagcagcgccacgcgttcctgtcgcacgaccgcgagcgg
ccgatcctcgagccgcagcgcctgttcctgtcggacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggcgggcggctgggcgaccggcctgccc
gagctcacggtcgaccgccatgccgacgatccgctcgccgcgctgcgcacgttcatcgac
acgtcgggcaagcgcgtgctgctgaccgtcgaatcggccggccgccgcgaaacgatcctg
cagctgctcgccgagcaccatctgcggccggcgtcgaacgaccacttcgccggctggctc
gcgagcgacgaccgcttcgcgctcggcgtcgcgccgctgtcgagcggcttcgcggtgccg
ggcgaaggctacgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgcg
gggcgccgccgccaggagcaggcgagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtgggcgacccggtcgtgcatgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggacctcggcgaaggcgagacggaattcctgcacctcgaatacgcgggcgac
agcaagctctacgtgccggtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
ccggacagcgcgccgctgcacgcgctcggctcgggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacaccgcggccgagctgctgaacctgtacgcacgccgcgcg
gcccgcgagggtcacgcgttcgcgctcgacccgcgcgactacgtgaagttcgcggagagc
ttcggtttcgaggagacgccggaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaa
gtcgcgctgcgcgccgcgttcatcgcggtgctgggcggcaaacaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgcggaccgcttcgccgactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtcaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctgaccgcg
acgccgattccccgcacgctcgggatggcgctcgagggcctgcgcgacttctcggtgatc
gccacggcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaggaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctggaggagctggtgcccgaggcg
cgcatcgcgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgctcggacaagttcggcctcgcgcagctg
caccagctgcgcggccgcgtcggccgctcgcaccaccaggcgtatgcgtacctgctcgtc
cacgatccgcaggcgctgaccaagcaggcgcagcgccggctggaagcaatccagcagatg
gaggagctcggctcgggcttctacctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctgtacacg
gagatgctgaatgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgaccgagatcaacctgcacgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcgtctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagatgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggctcgccgcgaagccgctcgggatcacg
aagatcgatgcgagcgaggcggcgatcgggctgcagttcgtgccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcgccacatcaagctcgcgggacaggac
aagctgcggatcgagacgcgctcgccggatctcgcggtgcgcgtgtcgacgatcaaggag
acgctgcgcgcgctcggtcattcgaaccggcaggacgcggccgccgcgtcgcgctga
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