Burkholderia ubonensis: BW23_620
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Entry
BW23_620 CDS
T03794
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bub
Burkholderia ubonensis
Pathway
bub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW23_620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bub03019
]
BW23_620
03009 Ribosome biogenesis [BR:
bub03009
]
BW23_620
Enzymes [BR:
bub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BW23_620
Messenger RNA biogenesis [BR:
bub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BW23_620
Ribosome biogenesis [BR:
bub03009
]
Prokaryotic type
rRNA processing factors
BW23_620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJX17343
LinkDB
All DBs
Position
I:682789..685896
Genome browser
AA seq
1035 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGRSGEPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPAEPTPAPVPVAAASGGIIGWLKGLFGMQPAPVPAPAPAPVKEQAARPARE
RTEKSEQRGERGGDRDRNRNRRGGAQQPQGGRDQAAAGRGGQPQRPEREGKEAREAREPR
EGREGREGREGRGQREPREAREGRETREPRETREPRERVEQPEAVEAAGRGERQERGERR
ERGERRKPTQHAATLETVTRGESHPELEADKAAALPGAEVTADAEAGARDGEERRRRRRG
RRGGRREREEDGAIVAHAAEGAEGEAAVAPAAEPVAHAAPVAEAPHAAAPAVAAAVAAAG
AVVAEAVAHAEPATADMQPEPARVEPAPAVTAVEPAVAAQPVETAAPVAAAEAGPAPVAV
SPNDALEVPEAPAAVAGPQPAPVAEVAPAAPVAMVETAPAVAAEPVRVEAAPVEAAVAAP
VVEQAQPAAAAPASASLESVLTQAGLVWVNTDADKFRAAQDAAAQLPRPARVPRERKALP
PVDTTPMQQVETTHH
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgatatcgagaccgccggacgcgaacaacgcaaaggcaat
atctacaaaggcgtcatcacccgcatcgagccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgtgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctcacgacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagccgcatcgcagagcggc
cgctcgggcgagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgcccctcttctcccgcttccagatcgagcaccagatcgagaccgcgtattcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcaccaacctcgaggcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggatgcgctcaagcatgatcgcgcccgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcggctgcgcccggcgctgtccgaaggcagc
cacgtgacctgcccgcgctgcaacggcaccggccatatccgcgacaccgaatcgtccgcg
ctgcaagtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcaatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgacgcgcgcctggacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctggaatcggaaaccggctacagcaag
cgcgccgccgaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcgccgagcccggcgccgcagcgtccggccgagccgacgcccgcgcccgtcccggtc
gccgctgcaagcggcggcatcatcggctggctgaagggcctgttcggcatgcagccggcg
cccgtgcccgccccggctccggcccccgtgaaagagcaggccgcccgcccggcgcgcgag
cgcaccgagaagtccgagcagcgcggcgaacgcggcggcgatcgcgatcgcaatcgcaac
cgccgcggcggcgcccagcagccgcaaggcggccgcgaccaggccgcagccggccgcggc
ggccagccgcagcgtccggagcgcgaaggcaaggaagcccgtgaagcacgcgagccgcgt
gaaggtcgcgagggtcgtgaaggccgcgagggccgtggccaacgcgagccgcgtgaagcg
cgcgagggccgcgaaacccgcgagccgcgtgaaacccgcgagccgcgcgagcgcgtcgag
cagccggaggccgtcgaggcagccggtcgcggcgagcgccaggaacgcggcgaacgtcgc
gagcgcggcgagcgccgcaagccgacccagcatgcggccacgctcgaaacggtcacccgc
ggcgaaagccatccggaactcgaagccgacaaggccgctgccctgccgggcgccgaggtg
acggccgacgccgaagccggcgcgcgtgacggcgaggaacgccgccgccgccgtcgcggc
cgccgcggcggtcgtcgcgagcgcgaggaagacggcgcgatcgtcgcccacgcagcggaa
ggcgctgaaggcgaagccgctgtcgcaccggcagcggagcccgtggcgcatgcagcaccg
gtcgccgaagcgccgcacgcggcagcaccggcagtcgcggcggctgtcgcggcagccggc
gccgtcgttgcggaagcggtcgcgcacgcagagccggccactgccgacatgcagccggaa
ccggctcgcgtcgagcccgcaccggccgtcaccgcggtcgaacccgccgtcgcggcgcaa
ccggttgaaaccgctgcgccggtcgctgcggccgaagccggccccgccccggtcgcggtc
tcgccgaacgatgcgctggaagtgccggaagcgcctgcggccgtcgcagggccgcaacct
gcaccggtcgccgaagtcgccccggccgccccggtcgcgatggtcgaaaccgcccctgcg
gtggcagccgagccggttcgcgtcgaagcggcgccggtcgaggctgccgtggccgccccg
gtcgtcgagcaagcgcaaccggctgccgcggcgcccgcctcggccagcctggagtcggtg
ctgacgcaagccgggctcgtctgggtgaacacggatgccgacaagttccgcgccgcgcag
gacgccgccgcgcagctcccgcggccggctcgcgtgccgcgtgagcgcaaggcgctgccg
ccggtcgacacgacgccgatgcagcaggtggaaacgacgcatcactga
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