Buchnera aphidicola APS (Acyrthosiphon pisum): BU347
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Entry
BU347 CDS
T00036
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
buc
Buchnera aphidicola APS (Acyrthosiphon pisum)
Pathway
buc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BU347 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buc03019
]
BU347 (rne)
03009 Ribosome biogenesis [BR:
buc03009
]
BU347 (rne)
Enzymes [BR:
buc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BU347 (rne)
Messenger RNA biogenesis [BR:
buc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BU347 (rne)
Ribosome biogenesis [BR:
buc03009
]
Prokaryotic type
rRNA processing factors
BU347 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
BAB13052
UniProt:
P57429
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All DBs
Position
complement(379296..382004)
Genome browser
AA seq
902 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDY
GEEKNGFLPLKEISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFI
SLAGSYLVLMPNSPKSGGISRRIEGNDRIALKELLTLLELPEEMSLIIRTAGAGKSIESL
RWDLSLRLQHWKTIQIIAKSRTAPFLIHQESNIIVRAFRDYLRQDIGEILIDNPKILDLA
RKHITFLGRPDFVNKIKLYSGEVPLFSYFQIETQINSAFQRKVRLPSGGSIMVDSTEALT
AIDINSSRSTSGTDIASTAFNTNLEAVDEISRQLRLRDLGGLIVIDFIDMSAISHQRAIE
NRLREIARDDRARIQIGQISRFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLS
LSILRLIEEEALKENTYEVRAIVPVEIACYLLNEKRDAVHAIEKRQAGGKTIIVPSKKMK
TPHYSVSRIRKSESKNYTRYGLSNIRQSKITSFLKKNLLKKKQKEILDVANFNFYDNCYN
KIQEAQENILKKNNYNNILLKVLSNNRNFIFKMITWFKNSFFIKNMLITSDIFKKNTLKN
TNNIFFKKKYSSLNKKNNNQKKRVILSKLFEANIENIPLKNKKLDTSSANYLYDNIERKK
NITKKNDLIQKNIHENSYLKHVLMNRYNVINIINNNYIFYKIFNRTKIFKNQNTNNSFLK
FSSVTSPIFIFSSVFSLELALGKVWIKYPIAILDETKKQKKLNRKQILHISSISETNTIV
NKNNYSGIKKIKHETYSFKKYVKNNIQNQEVTQSQLIKRTKKRNVFILDKKNFLYKRTCN
RKNKIHQSSAPITKISKQSDLNKKEKEFHYNLSMMKSSLRGKNSAGVHSATNFSNSPVSK
LK
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcagcaggaagagttgcgcgtagctcttgttgat
ggtcagcgtttatatgatcttgatatagagcattctggatcagaacaaaaaaaatcaaat
atatataagggaaagattactcgtatagaacctagtttagaagctgcttttgtagattat
ggtgaagaaaaaaatggttttttgccgttaaaagaaatttctaaaaattattttccagaa
aatcatattgaaactttaggttttaatatcaaaaatgttttacaagaaggtcaagaagtt
attgttcaaattagtaaagaagaacgaggaaccaaaggtgcagctttaacaacttttatt
agtttagctggaagttatttagttctgatgccgaatagtcctaaatctggtggtatatca
agaagaattgaaggaaatgataggatagcattaaaagagttattgacgttattagaacta
cctgaagaaatgagtttaattattcgaactgcaggagccggaaaatctatcgaatcatta
agatgggatctgtctctgagattacaacattggaagactattcaaataatagcaaaaagt
cggactgctccatttttgattcatcaagaaagtaatattattgttcgtgcttttagagat
tatttacgtcaagatattggagaaattttaatcgataatcctaaaatattagatttagcc
cgaaaacatattacttttttaggtcgtccagattttgtaaataaaataaagctatatagc
ggagaagttcctttgttcagttattttcaaattgaaacccaaatcaattctgcttttcaa
agaaaagtcagattaccttctggtggttcaattatggtagatagcactgaagctttaaca
gctattgacatcaattcttctcgttctacaagtggaactgatattgcatctacagcattt
aatactaatctcgaggcggtagatgaaatttcccgtcaattacgactacgagatttaggc
ggtttaatagtaattgatttcatagatatgtccgctattagtcatcagcgagccattgaa
aatagattacgtgaaattgcacgggacgatagagcgcgcattcaaattggtcaaatttct
cgttttggtttgttggaaatgtctagacaaagattgagttcgtctctaggagaatctagt
catcatatttgtccgagatgtacaggaacagggactatcagagataatgaatctttatct
ttgtctattttacgtttaattgaagaagaagcactaaaagaaaatacatatgaagtacgt
gctattgtaccagtagaaatagcgtgttatttactaaatgaaaaaagagatgctgttcat
gcaattgagaaacgtcaggctggtggaaaaactataattgttcctagtaaaaagatgaaa
actcctcattattctgtttctaggatcagaaaaagtgaaagtaaaaattatacaagatat
gggctttctaatattcgtcagagtaaaattacaagtttcttaaaaaaaaatctcttgaaa
aaaaaacagaaagaaattttagatgttgctaattttaatttttatgataattgttataat
aaaatacaagaagcacaagaaaatattttaaaaaagaataattataataatatattgtta
aaagttttatcaaataacagaaattttatatttaaaatgatcacttggtttaaaaattct
ttttttattaagaatatgttgattacaagcgatatttttaaaaagaatactttaaaaaat
acgaataatattttttttaaaaaaaaatatagttctttaaacaaaaaaaataataatcaa
aaaaaaagagtgattttatctaaactgtttgaagcaaatatagaaaatatacctttaaaa
aacaaaaaattagatacatctagtgcaaattatttgtatgataatatagaaagaaaaaaa
aatataacaaaaaaaaatgatttgatacagaaaaatatacatgaaaattcttacctgaag
catgttttaatgaatagatataatgtaattaatatcattaataataattatatattttat
aaaatatttaacagaactaaaatttttaaaaatcaaaatactaataatagctttttaaaa
ttttcttctgttacatctccaatattcatattttcttcagtattttcattagaattagca
ttaggaaaagtttggattaaatatccaattgctatattagatgaaacaaaaaaacaaaaa
aaattaaatagaaaacaaatattgcatatatcttctatttccgaaacaaatacaatagtt
aataaaaataattattctggaataaaaaaaataaaacatgaaacatattcatttaaaaaa
tatgtaaaaaataatattcaaaatcaagaagttacgcaatctcaattaataaagagaact
aaaaaaagaaatgtatttattttagataaaaaaaattttctttataaaagaacatgtaat
agaaaaaataaaatacatcaatctagtgcgccaataacaaaaatttctaaacaatcagat
ttaaataaaaaagaaaaagaatttcattataatttatcaatgatgaaatcaagtcttaga
gggaaaaattctgcaggagtacactctgcaacaaatttttctaattcacctgtctcaaaa
cttaaataa
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