Buchnera aphidicola APS (Acyrthosiphon pisum): BU596
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Entry
BU596 CDS
T00036
Symbol
rho
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
buc
Buchnera aphidicola APS (Acyrthosiphon pisum)
Pathway
buc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BU596 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buc03021
]
BU596 (rho)
03019 Messenger RNA biogenesis [BR:
buc03019
]
BU596 (rho)
Transcription machinery [BR:
buc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BU596 (rho)
Messenger RNA biogenesis [BR:
buc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BU596 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BAB13281
UniProt:
P57652
LinkDB
All DBs
Position
complement(626196..627455)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY
NRSGTRKEELLTLPDELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgcacttaaaaatatgccagtgtctgaattaattactcttggtgaaaaa
atggggttggaaaatttagcgcgtatgcgtaaacaagatattatttttgccatccttaaa
caacatgcaaaaagtggagaagatatatttggcgacggtgttttagaaatactacaagat
ggatttggctttctacgttctgcagatagctcttatttagctggtcctgatgatatttat
gtttcaccgagtcagattcgtagatttaatctacgtacaggtgatactattgctggaaaa
ataagaccccctaaagaaggcgaaagatattttgctctacttaaagtaaacgaagtaaat
tatgataaacctgaaaatgcaagaagcaaaatattatttgaaaatttaacaccattacat
gccaattctagactacgaatggaacgtggaaacggatcaaccgaagatttaaccgcaaga
gtattagatttagcatcaccaatcggacgtggacaaagaggattaattgtagctccgcca
aaggcaggaaaaacaatattactgcaaaatatagcacaaagtattgcttataatcatcca
gattgcgttttaatggtattattgattgatgaaagaccagaagaagttactgaaatgcaa
agattagttaaaggagaagtagttgcctctacttttgacgaacctgcatcaagacatgtt
caagtggctgaaatggttattgaaaaagcaaaaagattagtagaacataaaaaagatgta
ataattttacttgattctattactcgtttagcaagagcctataatacagtagtacctgca
tcaggaaaagtattaactggaggagtagatgcaaatgctttacatagacccaagcgattt
tttggtgctgcgcgtaatgtggaagaaggaggaagtttgacaatcattgcaactgcatta
gttgatactggttctaaaatggatgaggtaatatacgaagagtttaaaggaacaggcaat
atggagcttccattatctaggaaaattgcagaaaagcgtgtttttccagctattgattat
aatcgatctggtactagaaaagaagaattattaactttgccagatgaactacaaaaaatg
tggattttaagaaaaattattcatcctatgagtgaaatagatgcaatggaatttttgctt
aataaacttgcaatgaccaaaacaaatgatgaattttttgatatgatgaaacgctcttaa
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