Burkholderia humptydooensis MSMB43: AQ610_03025
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Entry
AQ610_03025 CDS
T04266
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bud
Burkholderia humptydooensis MSMB43
Brite
KEGG Orthology (KO) [BR:
bud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bud03016
]
AQ610_03025
Enzymes [BR:
bud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AQ610_03025
Transfer RNA biogenesis [BR:
bud03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AQ610_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ALX41495
LinkDB
All DBs
Position
1:650100..652193
Genome browser
AA seq
697 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEA
AQQIDLDFLWECAPAEEFAYATLADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQ
RAPEEQLKMALAALERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTKPDKNSIEYKA
LDAAALARGVSSARLMLDCGGIPSARALHEARFLAEYFPHGTSFPSVTVGKLPDDLPRAD
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGVARGDAVDAIARARLSTVYM
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVKRDTQEIVANETRAEFVYVKSNLRHNT
LDELVTEDALAAGAGDYPHKDDIAVLWPLAQALFERRQVARAGYGLRREAQRNTDYNFYV
EGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYA
VVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSAAVVKGDLVRLDEVPLLLHVPAL
GVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPTVSSGEPADDDDADAADDVLLDAADV
SAESEAEALAEAGGAASGDGNGNGNGESPANGEEQSK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgacgcgtttcaggtcgaattgccgggcggccggcgcgcgaaggtgcgcgcgaaggac
gtgctgattgaattcgagaaacccgcggcgggcgaactgatgcagcaggcggacgaagcc
gcccagcagatcgacctggactttctgtgggagtgcgcgcccgccgaggaattcgcgtac
gcgacgctcgccgacgaatatttcggcgcgagctatggccccgtcgaacgcgcggcgctc
gtgctgcgcctgcacggcgcgcccgtctattttcgccgcaagggacgcggccagtatcag
cgcgcgcccgaagagcaactgaagatggcgctcgccgcgctcgagcgcaagcgccagcag
gcgctcgtgcaggccggctacgaagaggagctgaaggcgggcaggctgcccgatgcgttc
gcgggcaaggcgctcggcctgctgacgaagccggacaagaattcgatcgaatacaaggcg
ctcgacgcggcggcgctcgcgcgcggcgtgtcgagcgcgcggctgatgctcgactgcggc
ggcattccgtcggcgcgcgcgctgcacgaggcgcgcttcctcgccgaatacttcccgcac
ggcacgagctttccgtccgtcacggtcggcaagctgcccgacgacctgccgcgcgcggac
gtcaacgcattctcgatcgacgacatcacgacgaccgagatcgacgacgcgttctccgtc
gagcatctgtccgacggacgcgtgcggatcggcgtgcacatcgcggcgcccgcgctcggc
gtcgcgcgcggcgacgcggtcgatgcgatcgcgcgcgcgcggctgtcgaccgtctacatg
ccgggcgacaagatcacgatgctgccggacgacgtcgtcgacgtgttcacgctgaaggag
ggcgactaccgtccggcgctgtcgctgtacatcatcgtgaagcgcgacacgcaggagatc
gtcgcgaacgagacgcgcgccgaattcgtctacgtgaagagcaacctgcggcacaacacg
ctcgacgagctcgtcaccgaggacgcgctcgccgcgggcgcgggcgactatccgcacaag
gacgacatcgcggtgctctggccgctcgcgcaggcgctcttcgagcggcgccaggtcgcg
cgcgcgggctacgggctcaggcgcgaagcgcagcgcaacaccgattacaacttctacgtc
gaaggcgagcacgtatcgatcacgccgcgccggcgcggctcgccgctcgatctgatcgtg
tccgagctcgcgattctcgcgaactcgacgtggggcgcgttcctgcacgatcacagcgtg
cccggcatctaccggacgcagcgcgcgttcggcatgccgagcgggccgaagcgcacgcgg
atgcagacgagcgccgcgccgcacgaggggctcggcgtgccgcagtacgcatggagcacg
tcgccgctgcgccgctacgtcgacctcgtcaaccagtggcagttgctcgcgtgcgtgcag
cacggcgtgaccgcgaagctcgccgcgccgttcaagcagaaggacgcggatctgtacgcg
gtcgtgcagggcttcgacgacacgtacgccgcctacgccgatcaccagcgccggatggag
tatttctggtgcctgcgctggatcaagcaggaaggccgcaagcaggtgagcgcggccgtc
gtgaagggcgatctcgtgcgcctcgacgaagtgccgctgctgctgcacgtgcccgcgctc
ggcgtgcatgcgcgcggcacgcgggtgctgctcgacgtgatgtcggtcgacgaattgacg
atcgaggcgtcggtgcggctcgtgagcgtgctcgacgcgccgacggtgtcgagtggcgag
ccggccgacgacgatgacgccgacgcagccgacgacgtgctgctcgacgccgccgacgta
tcggcggaaagcgaagcggaggcgctcgccgaggcgggcggcgcggcgagcggcgacggc
aatggcaatggcaatggcgaatcgccggcgaacggtgaggaacaatcgaaatga
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