Burkholderia humptydooensis MSMB43: AQ610_07765
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Entry
AQ610_07765 CDS
T04266
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bud
Burkholderia humptydooensis MSMB43
Pathway
bud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AQ610_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bud03400
]
AQ610_07765
Enzymes [BR:
bud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AQ610_07765
DNA repair and recombination proteins [BR:
bud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AQ610_07765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALX44301
LinkDB
All DBs
Position
1:complement(1694923..1698396)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDNASPSQSPIALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQ
RLAQELRYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATT
ALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLF
PMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWR
ETFEGDPSRSPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPERAQLVFAGDLDAAIK
RFTADTKQRYAFLSHDRERPILEPQRLFLSDDDFYLLAKPFARLVLPAQPAGGWAAPLPN
LALDRHADAPLAAFVAYLETTKNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAAWLE
SDERFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSEL
KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYASDSKLYVPVAQLHVISRYSGADP
DSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFADSF
GFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLSP
TTLLAEQHTQTFIDRFADWPVKIVELSRFKSTKEVNTAIQQINEGSVDIVIGTHKLLSSD
VQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA
TAPQKRLAIKTFVRSEDESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEALVPEAR
IAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE
VLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYC
GDVQERLSLYKRLANCEHGDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIVK
IDASEAAIGLQFVPNPPIDPMRIIDMVQKHRHIKLAGQDKLRIETRTPDLAVRVSTVKET
LRALGQPQQSRAQAAAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaacgcctccccttcgcagtcccccatcgcgctcgtcaaggcgggccaacgc
ttcgcattcgacggtgcgcacggctccgccgacgcgctcgtcatcgcccgctatctcgct
gcgcaccgcgcgcaggtgccgcttctcgccgtgatctgcgcgaacgcggtcgacgcgcag
cggctcgcgcaggaactgcgctacttcgcgcccgacgcgcgcgtgcgcgtgctgcccgac
tgggagacgctgccgtacgacacattctcgccgcaccaggatctcgtgtccgagcggctc
gcgacgctgcacgacctgggcgaaggccgctgcgacatcctgctcgtgccagcgacgacg
gcgctctaccgaatgccgcccgcgtcgttcctcgccgcgtacacattctcgttcacacag
ggcgagcggctcgacgaagcgaagctgaaggcgcaactgacgctcgccggctacgagcac
gtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctgttc
ccgatgggctctccgctgccgtaccggatcgatctgttcgacgaccaggtcgactcgatc
cgcgcgttcgatccggacacgcagcgcagcctctacccggtgcgcgacgtgcgcctcctg
cccggccgcgagttcccgttcgacgaggccgcgcgcaccgcgttcagaagccgctggcgc
gagaccttcgaaggcgacccgagccgctcgccgatctataaggacatcggcaacggcgtg
ccgtcggccggcatcgaatactacctgccgctcttcttcgacgagacggcgacgctcttc
cactatctgcccgagcgcgcgcagctcgtgttcgcgggcgatctcgacgcggcgatcaag
cgcttcacggccgacacgaagcagcgctacgcgttcctgtcgcacgaccgcgagcggccg
atcctcgagccgcagcgcctgttcctgtccgacgacgacttctatctgctcgcgaagccg
ttcgcgcggctcgtgctgcccgcgcagccggcgggcggctgggccgcgccgctgccgaac
ctcgcgctcgaccgccacgcggacgcgccgctcgccgcattcgtcgcgtatctggaaacg
acgaagaaccgcgtgctcttcaccgtcgaatccgcgggccgccgcgagacgatcgcgcaa
ttgttcgccgagcaccatctgcgccccgcgggcagcgacagcttcgccgcgtggctcgag
agcgacgagcgcttcgcgctcggcgtcgcgcccctcgcgagcggcttcgcggtgccgggc
gaaggttacgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgcggga
cgccgccgccaggagcaggcgagcaacgtcgacgcgatggtgcgtgacctgtccgagctg
aaggtgggcgacccggtcgttcacgcgcagcacggcatcggccgctacatggggctcgtg
tcgatggatctcggcgaaggcgagaccgagttcctgcatctcgaatacgcgagcgacagc
aagctgtacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgcggacccg
gacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgccgcgcc
gcgcagcagatccgcgacaccgcggccgagctgctgaacctctatgcgcgccgcgcggcg
cgcgagggccacgcgttcgcgctcgatccgcgcgactacgtgaagttcgccgacagcttc
ggcttcgaggaaacgcccgaccaggccgccgcgatcgcggccgtgatcggcgacatgacg
agcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaggtc
gcgctgcgcgcggcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcgccg
accacgctgctcgccgagcagcacacgcagaccttcatcgaccgcttcgccgattggccc
gtgaagatcgtcgagctgtcgcgcttcaagtcgacgaaggaagtgaacacggcgatccag
cagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcggac
gtgcagttcaagcggctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtgcgc
cagaaggaagcgctgaaggcgctgcgcgcggaagtggacgtgctcacgctgaccgcgacg
ccgatcccgcgcacgctcggcatggcgctcgagggcctgcgcgacttctcggtgatcgcg
accgcgccgcagaagcggctcgcgatcaagaccttcgtgcgcagcgaggacgagagcgtg
atccgcgaggcgatgctgcgcgagttgaagcgcggcggccaggtgtacttcctgcacaac
gaggtcgagacgatcgagaaccgccgcgcgatgctcgaggcgctggtgcccgaggcgcgc
atcgcgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgatttc
gtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgagaccggcatcgacgtg
ccgagcgcgaacaccatcatcatgcaccgcgcggacaagttcggcctcgcgcagttgcac
cagttgcgcgggcgcgtcggccgctcgcaccaccaggcgtacgcatacctgctcgtgcac
gatccgcaggcgctcacgaagcaggcgcagcggcggctcgaggcgatccagcagatggag
gagctcggctcgggcttctacctcgcgatgcacgacctcgagatccgcggcacgggcgag
gtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacaccgag
atgctgaacgacgcggtgaaggcgctgaagaacggcaaggagccggacctcaccgcgccg
ctcgccgcgacgaccgagatcaacctgcacgcgcccgcgatcctgcccgccgactattgc
ggcgacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggcgat
tcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcaggcg
cacgcgctcgtcgagacgcaccggctgcggctcgccgcgaagccgctcggcatcgtgaag
atcgacgcgagcgaagcggcgatcgggctgcagttcgtgccgaatccgccgatcgatccg
atgcgcatcatcgacatggtgcagaagcaccggcacatcaagctcgcgggccaggacaag
ctgcggatcgagacgcgcacgccggacctcgcggtgcgcgtgtcgacggtgaaggagacg
ctgcgcgcgctcggccagcctcagcagtcgcgcgcgcaggcggcggcacgatag
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integrated database retrieval system
