Burkholderia humptydooensis MSMB43: AQ610_13530
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Entry
AQ610_13530 CDS
T04266
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bud
Burkholderia humptydooensis MSMB43
Pathway
bud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQ610_13530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bud03019
]
AQ610_13530
Enzymes [BR:
bud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AQ610_13530
Messenger RNA biogenesis [BR:
bud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AQ610_13530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALX43317
LinkDB
All DBs
Position
1:complement(3035772..3037220)
Genome browser
AA seq
482 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA
EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRTLSLETLELDLPRHRHDERGGRRERDRDERRGASAGRRSAGG
ERAYHPRREAPIDDFFLKPYVPSPSASKPEEATPVQPEKKAPKQPLAALLGGFGMPRKTS
SS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccaagcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaagcgattgccgagcagggctatacgacgccgacgccgatccaggcgaag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagcttttcgctgccgatcatccagcggctgctgccgcaggcgaacacgagc
gcgtcgcctgcccgccatccggtgcgtgcgctgatcctcacgccgacccgcgagcttgcc
gatcaggtcgccgcgaacgtgcacgcgtacgcgaagcacacgccgctgcgcagcgccgtc
gtgttcggcggcgtcgacatgaacccgcagatggccgagttgcgccgcggcgtcgagatc
ctgatcgcgacgccggggcgcctgctcgatcacgtccagcagaagaccgcgaatctcggt
caggtgcagatcctcgtgctcgacgaggccgaccggatgctcgacatgggcttcctgccc
gatctgcagcgcatcctgaacctgctgccgaaagagcgtcagacgctgcttttctcggcg
acgttctcgcccgagatcaagaagctcgcgtccacctacctgcgcgatccgcagacgatc
gaggtcgcgcgcagcaacgcggccgcgtccaccgtcacgcagatcgtctacgacgtcgcc
gagggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgctcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgccttgcgcgccagatcgagcgcgac
ggcatcgtcgcggccgcgattcacggcgaccgttcgcagagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgaccgacgtggcggcgcgcggc
ctcgacatcgtcgaactgccggccgtcatcaacttcgatctgccgttcaatgcggaagac
tacgtgcaccggatcggccgcacggggcgcgcgggcgcgtcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagcttgccgacatcgagaagctgatcaagcggacgctg
tcgctcgaaacgctcgagctcgacctgccgcgccatcgccatgacgagcgcggcggccgc
cgcgagcgcgaccgcgacgagcgccgcggcgcatcggccggccgccgttcggcgggaggc
gagcgcgcgtatcatccgcgccgcgaagcgccgatcgacgatttcttcctgaagccgtac
gtgccgtcgccgtccgcgagcaagccggaagaggcgacgcccgtgcagccggagaagaag
gcgcccaagcagccgctcgccgcgctgctgggcgggttcgggatgccgcgcaagacgtcg
tcgtcgtga
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