Burkholderia humptydooensis MSMB43: AQ610_15485
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Entry
AQ610_15485 CDS
T04266
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bud
Burkholderia humptydooensis MSMB43
Pathway
bud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQ610_15485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bud03019
]
AQ610_15485
Enzymes [BR:
bud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AQ610_15485
Messenger RNA biogenesis [BR:
bud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AQ610_15485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DegT_DnrJ_EryC1
CMS1
Ric8
P-loop_SecA
Sacchrp_dh_NADP
CARD_2
Motif
Other DBs
NCBI-ProteinID:
ALX43665
UniProt:
A0A7U4P638
LinkDB
All DBs
Position
1:3477499..3478947
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AA seq
482 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPA
KRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIPGFEPDPNAKPEPIQRRGQRGGNGGGSGGGAGSGGRGNRPPRAAGQ
PQAQQGQPAARRDGGAQAKPAKPQQARGGSGRPAGNGNSGNSNGGGAHANRNRPSRSGQR
GH
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcttctctcggactcgccgaaccgctcgtgcgggccgtcaacgagctgggc
tacacgcagcccacgccgatccaggctcaggccattcccgccgtgctgggcggcggcgat
ctcctcgccggcgcgcagacgggcaccggcaagacggccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgaaaaccgcagcgcgcgccgcgcggtgcgcgcgctc
atcctcacgccgacgcgcgagctcgccgcgcaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaagctgcgctcggccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgttgaagcgcggcgtcgacatcgtcgtcgcgacaccagggcgcctgctcgatcac
atgcagcagaagacgatcgacgtgtcgagcctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcattcacgacatcaagcgcgtgctcgcgaagctgccggcg
aagcgccagaacctgctgttctcggcgaccttctccgacgagatcaagtctcttgcggac
agcctgctcgattcgcccgcgttgatcgaagtcgcgcgccgcaacacgacggccgagacg
atcgcgcagaagatccacccggtcgatcgcgaccgcaagcgcgagctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgcacgaagcacggcgcgaac
cggctcgccgagcaactggcgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgatcagttgccgcacgtcgtcaac
ttcgatctgccgaacgttcccgaggactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgaacggctgatcaagcgcgagattccgcaggaagtgattccgggcttcgagccggat
ccgaacgcgaagccggagccgatccagcggcgcgggcagcgcggtggaaacggcggcggc
agcggcggcggcgcgggcagcggcggtcgcggcaatcgcccgccgcgcgcggcgggccag
ccgcaggcgcagcagggtcagcccgccgcgcgacgcgacggcggcgcgcaggcgaagccc
gccaagccgcaacaggcgcgcggcggcagcggccgcccggcgggcaacggcaattccggc
aattcgaacggcggcggcgcgcatgcgaaccgcaaccgtccatcgcgcagcggccagcgc
ggccactga
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