Caballeronia cordobensis: BRPE67_ACDS08190
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Entry
BRPE67_ACDS08190 CDS
T03604
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bue
Caballeronia cordobensis
Pathway
bue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRPE67_ACDS08190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bue03019
]
BRPE67_ACDS08190
Enzymes [BR:
bue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BRPE67_ACDS08190
Messenger RNA biogenesis [BR:
bue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BRPE67_ACDS08190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAO85874
LinkDB
All DBs
Position
1:886122..887612
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AA seq
496 aa
AA seq
DB search
MSDSVATNTSTAVGAAPTFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGA
AQTGTGKTASFSLPIIQRLLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHT
PLRSTVVFGGVDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML
DMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVRQ
IVFEVHESDKSGAVAQLIRERELKQVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQS
ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGAS
GDALSLCSANERKQLADIEKLIKRPLEVEPLEVTMRARRDGATSAPRRDERFGRSERAEH
RHGSRDEAGSRRRTASTHDRPRGRQQPIDEFFLKPYEPSPSAMKRQEETVEPERKSAPKQ
PLAALLGGLGMPRKSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccgtcgccacgaacacgtccaccgctgtgggcgccgcgcctacgttcgac
cagttcggtttggccgccgacatcctgaaggcggtgcgcgagtccggctacaccacgccc
acgccgatccaggcgcaggcgattccggtcgtcctcgcgggccgcgatgtcatgggcgcc
gcgcagaccggcaccggcaagaccgcgagcttctcgctgccgatcatccagcgcctgttg
ccgagcgcgaacacgagcgcctcgccggcgcgccatccggtgcgcgcgctgatgctcacg
cccacgcgcgagctcgccgatcaggtcgccgccaacgtgcagacgtactcgaagcacacg
ccgctgcgcagcacggtcgtgttcggcggcgtcgacatgaacccgcagtccgatgcgctg
cgccggggcgtcgaaatcctgatcgcgacgcccggacgcctgctcgatcacgtccagcag
aaaacggtcaatctgggccaggtccagatgctggtgctcgacgaagccgaccgcatgctg
gacatgggctttctgcccgacctgcagcgcattctgaatctgctgccgaaggagcgtcag
acgctgctgttctccgcgacgttctcgccggaaatcaagaagctcgcgtccacgtatctg
cgcaatccgcagacgatcgaagtcgcccgcagcaattcgaccgcgacgaacgtgcgtcag
atcgtcttcgaggttcatgaaagcgacaaatccggcgcggtcgcgcagctcattcgcgag
cgcgagctgaagcaggtgatcgtgttctgcaacagcaagatcggcgcgagccggctcgcg
cgcgtgctggagaaggacggcatcgtcgcgacggcgattcacggcgaccgttcgcaaagc
gagcgcatgcaggcgctcgacgcgttcaagcgcggcgagatcgaagcgctcgtcgccacc
gatgtcgccgcgcgcggtcttgatatcgccgaattgccggcggtcatcaacttcgacctg
ccgttcaacgcggaagattatgtgcaccgcatcggccgcacggggcgcgcgggcgcgtcg
ggcgacgcgctgtcgctgtgcagcgcgaacgagcgcaagcaactcgccgacatcgaaaag
ctcatcaagcgtccgctcgaagtcgagccgctcgaagtgacgatgcgcgcgcgccgcgat
ggtgcgacgtccgcgccgcggcgcgacgagcgcttcggccgttcggagcgcgccgagcac
cgtcacggatcgcgcgacgaagccggttcgcgccgccgcacggccagcacgcatgatcgt
ccgcgcggccgtcagcagcccatcgacgagtttttcctgaagccctacgagccgtcgccc
tcggcgatgaagcgtcaggaggaaacggtcgagcccgagcgcaagagcgcgccgaagcag
ccgcttgcggccttgctcggcggattaggcatgccgcgcaagtcgtcgtaa
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