Caballeronia cordobensis: BRPE67_ACDS15990
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Entry
BRPE67_ACDS15990 CDS
T03604
Symbol
trmA
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bue
Caballeronia cordobensis
Brite
KEGG Orthology (KO) [BR:
bue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bue03009
]
BRPE67_ACDS15990 (trmA)
Enzymes [BR:
bue01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
BRPE67_ACDS15990 (trmA)
Ribosome biogenesis [BR:
bue03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
BRPE67_ACDS15990 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_15
RrnaAD
Methyltransf_23
TRM5-TYW2_MTfase
TRAM
MTS
Methyltrans_SAM
Cons_hypoth95
Methyltransf_11
Methyltransf_32
PCMT
Methyltr_RsmB-F
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
BAO86654
LinkDB
All DBs
Position
1:complement(1723247..1724662)
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AA seq
471 aa
AA seq
DB search
MSEAARKTSHRRRAAPAKFVTPDPDFVAPELEIESLDMEARGVGRTVNEDGEPGKVIFVE
GALPGERVSYSSYRKKPSFEQAQVVKVLRESVIRAKPKCQFFGICGGCSMQHLDVLAQIA
VKQRVLEDSLQHLSKLRAETMFRPIHGPSWGYRYRARLTVRHVEKKGGVLVGFHERKSSY
VADMTSCEVLPPHVSAMLVPLRHLVAGLSIRDRMPQIELAVGSDVTALVLRILEPLTEAD
EALIRAFADEHDVQFWLQPKGPDTVYPFYPLDRELAYTLPEFDIRMPFKPTDFTQVNHQI
NRVLVSRALSLLAPESSDRVLDLFCGIGNFTLPLARVSREVVGIEGSEALTARALENAKA
NGVDAHTSFACRNLFEVTADDLRALGAFDKFLIDPPREGALAVSKALADIAQSGDGPLPE
RIVYVSCNPATLARDAGLLVHEAGYRMKGAGVVNMFPHTSHVESIALFERD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaagccgctcgaaaaacttcgcatcgccgccgcgccgcgccggcgaaattcgtc
acgcccgatcccgatttcgtcgcgcccgagctggaaatagagtcgctcgatatggaagca
cgcggcgtcggccgcacggtcaacgaggacggcgagccgggcaaggtcattttcgtcgaa
ggcgcgctgccgggcgagcgggtcagctattcgagctatcgcaagaaaccgagcttcgag
caggcgcaagtggtcaaggtgctgcgcgaaagcgtgatccgcgcgaagccgaagtgccag
tttttcggcatctgcggtggctgctcgatgcagcatctcgacgtgctcgcgcagatcgcg
gtcaagcagcgcgtgctcgaagacagcctgcagcatctgtcgaagctgcgcgcggagacg
atgttccggccgattcacgggccgtcgtggggctatcggtatcgcgcgcgcctgacggtg
cggcatgtcgaaaagaagggcggcgtgctggtcgggtttcacgagcgcaagagcagctac
gtcgcggacatgacgagctgcgaagtgctgccgccgcatgtgtccgcgatgctcgtgccg
ctgcgtcatctggtggccggcttgtcgatccgcgatcgcatgccgcagatcgagctcgcg
gtcggctccgacgtgaccgcgctcgtgctgcgcattctcgaaccgctgaccgaggccgac
gaagccctgatccgcgcattcgccgacgagcatgatgtccagttctggctccagccgaag
ggcccggacacggtgtatccgttctatccgctcgatcgcgaactggcgtacacgctgccg
gaattcgatattcgcatgccgttcaagccgaccgatttcacgcaggtgaatcatcagatc
aatcgcgtgctggtgagccgggcgctgagtctgcttgcacccgaaagctcggaccgcgtg
ctcgatcttttctgcggcatcggcaatttcacgctgccgctcgcgcgggtgtcgcgcgaa
gtcgtgggcatcgagggcagcgaggcgctgaccgcgcgtgcgctcgagaacgcgaaggcg
aatggcgtcgatgcgcacacgtcgtttgcgtgccgcaatctcttcgaagtcaccgccgac
gatctgcgcgcgctcggcgccttcgacaagttcctgatcgatccgccgcgcgagggcgcg
ctcgccgtgtcgaaggcgctcgcggacattgcgcaaagcggcgacgggccgttgcccgaa
cgcatcgtgtatgtatcgtgcaatccggcaaccctcgcgcgcgacgcgggcctcctcgtg
catgaagccggctaccgcatgaagggcgcgggcgtggtgaacatgtttccgcatacgtcg
cacgtcgagtcgattgcgttgttcgagcgcgactga
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