Buttiauxella sp. 3AFRM03: D8682_12150
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Entry
D8682_12150 CDS
T05676
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
buf
Buttiauxella sp. 3AFRM03
Pathway
buf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D8682_12150 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buf03021
]
D8682_12150 (rpoD)
Transcription machinery [BR:
buf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D8682_12150 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AYN27663
LinkDB
All DBs
Position
2299680..2301515
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AA seq
611 aa
AA seq
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MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THIGSELTTEENSDSDDEEDDDDADDDNSIDPELAREKFGELRTQYERTRDTIKAKGRAH
ADSAAEILQLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMRLCVEQCKMPKKNF
ITLFTGNETSETWFKAAIAMNKPWSEKLHDVADDVHRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRN
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaaacttcttgttaccaagggcaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactctgatcag
atcgaagacatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcacct
gacgccgatgacctgttgcttgctgaaaactcaaacaacacagacgaagatgcggaagaa
gctgctgcacaggttctgtccagcgttgaatccgaaatcgggcgtactactgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgagctgttaacccgtgagggtgaaatcgat
atcgctaagcgtatcgaagacggtatcaaccaggtgcagtgctccgttgccgaatacccg
gaagcgatcacttatctgcttgagcagtatgaccgcgtcgaagcagaagaagcacgtctg
tctgatttgatcaccggatttgttgacccgaatgcagaagaagaccttgcccctaccgcc
actcacattggttctgaactgaccaccgaagaaaacagtgacagtgacgatgaggaagac
gacgacgacgcggacgatgacaacagcatcgaccctgaactcgctcgtgagaaatttggc
gaactgcgtacgcagtacgaaagaactcgcgacacgattaaagcgaaaggccgtgctcac
gcagactctgccgctgaaatcttgcaattgtctgaagtcttcaaacagttccgcctggta
ccgaagcaattcgattacctggtaaacagcatgcgcgtcatgatggaccgcgttcgtacg
caagaacgtctgatcatgagattgtgtgttgaacagtgcaaaatgccgaagaaaaacttc
atcacactgttcaccggcaacgaaaccagcgaaacctggttcaaagccgctatcgcaatg
aacaagccgtggtctgaaaaactgcatgacgttgctgacgacgttcatcgtagcttgcag
aaactgcaacagattgaagaagaaaccggcctgactatcgagcaggttaaagacattaac
cgtcgtatgtccatcggtgaagcgaaagctcgtcgtgcgaagaaagagatggtggaagca
aacttacgtctggttatttcgatcgccaagaaatacaccaaccgtggtctgcaattcctc
gacctgattcaggaaggtaacatcggcctgatgaaagcggttgataagtttgaataccgc
cgtggttataagttctcgacttacgccacatggtggattcgccaggctatcactcgctct
atcgctgaccaggcgcgtaccatccgtattccggtgcatatgattgagactatcaacaaa
ctcaaccgtatttcgcgccagatgctgcaagagatgggtcgtgagccaacgccggaagaa
ctggctgaacgcatgttaatgccggaagacaaaatccgtaaagtgctgaagatcgccaaa
gaacctatctccatggaaacgccgatcggcgacgatgaagattcgcatctgggtgatttc
atcgaggataccaccctcgagctgccactggactctgcaacgtctgaaagcctgcgtaac
gcaactcacgacgttctggcgggcctgacagcgcgtgaagcgaaagttctgcgtatgcgt
ttcggtatcgacatgaataccgaccacacgctggaagaagtgggcaaacagttcgacgtt
acccgcgaacgtatccgtcagatcgaagcgaaggcactgcgcaaactgcgtcacccaagc
cgctctgaagtactgcgtagcttcctggacgactaa
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