Buttiauxella sp. 3AFRM03: D8682_13245
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Entry
D8682_13245 CDS
T05676
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
buf
Buttiauxella sp. 3AFRM03
Pathway
buf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8682_13245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buf03019
]
D8682_13245
03016 Transfer RNA biogenesis [BR:
buf03016
]
D8682_13245
Enzymes [BR:
buf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D8682_13245
Messenger RNA biogenesis [BR:
buf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D8682_13245
Transfer RNA biogenesis [BR:
buf03016
]
Prokaryotic type
tRNA degradation factors
D8682_13245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AYN27862
LinkDB
All DBs
Position
complement(2508692..2511160)
Genome browser
AA seq
822 aa
AA seq
DB search
MSKDPFQEREAEKYENPIPSREFILAHLSKREKPANRDELAEELNITGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCMH
GDIVLAQPLGADRKGRREARIVRVLEPRTGQIVGRYFTDAGISFVVPDDSRLSFDILIPP
EGVMGARMGFVVVVELTQRPTRRTKAVGKIVEILGDNMGTGMAVDMALRTHEIPYVWPPE
VEAQVASLKEQVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLYVAIA
DVSYYVRPPTALDKEARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
STGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDVS
RAQRGGISFESEEAKFIFNAERRIERVEQTVRNDAHKLIEECMILANIAAARFVEKNNEP
SLFRDHDRPTNEAITSFRSVLAELGLELPGGQKPEPRDYAELLNSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLLLHRAIKYLLAKEQGHTGNSTESG
GWHYEMDEMLQLGQHCSMAERRADEATRDVADWLKCDFMQDQVGNTFTGIIASVTGFGFF
VRLTDLFIDGLVHVSTLDNDYYRFDQIGQRLIGESGGQTYRLGDRVEVRVEAVHMDERKI
DFALISSTRVPRGAGKTEKDRAKKGANGNGPKRRQGGKRTNFEPDSTFRKEKGPAKPKKA
KAEKSADTKAEPKAKKPKTQSDKTRKIAAATKAKRAAKKQPS
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggaacgagaagccgaaaaatacgaaaacccgatcccaagc
cgggagtttattctcgctcatctctccaaacgtgaaaaaccagccaatcgtgacgaactg
gctgaagaactgaatattaccggtgaagaacaacttgaagcgctgcgtcgccgtttgcga
gccatggaacgcgatggacagttggtctttacccgccgccagtgttacgccctgccagaa
cgtctcgatttgctaaaaggcaaagtcattggccatcgcgatggttttggtttcctgcgc
gtagaaggtcgtaaagacgatctctacctttcatctgagcagatgaaaatgtgcatgcat
ggcgacatcgtgctggcgcagccgctgggtgccgaccgtaaaggccgtcgcgaagcgcgt
attgtgcgcgtacttgagccaagaaccgggcaaatcgttggccgctactttaccgatgcc
ggtattagttttgtggtgcctgacgacagccgcctgagcttcgatatccttatcccacca
gaaggggtaatgggcgcacgcatgggctttgtggtagtggttgaactgactcagcgtcca
actcgccgcaccaaagctgtaggtaaaattgttgagattcttggcgacaacatgggcacc
ggcatggctgtcgatatggcgctgcgcacccatgaaatcccatacgtctggccgccagaa
gtcgaagcacaagtcgcttcacttaaagaacaggtgccggaagaagccaaaattggccgc
gtggatttgcgtgacctgccgcttgtcaccatcgatggtgaagatgcgcgtgacttcgat
gatgccgtgttctgtgagaagaaacgtggcggcggctggcgtttatatgtcgctattgcc
gacgtaagctattacgttcgcccgccaaccgcgctggataaagaagctcgtaaccgtggc
acgtcagtttacttcccatcgcaggttatcccgatgctgccggaagtgctgtccaacggc
ttgtgctcgctcaatccacaggttgaccgtctgtgtatggtctgtgaaatgaccatctct
tcgacgggccgtctgaccggttataaattctacgaagcggtaatgagctcccatgcgcgt
ctgacctacaccaaagtgtggcacatgttgcagggcgaccaggaactgcgcgagcaatat
gcgccgctggttaagcacattgaagagctacataacctgtataaagtgctggatgtttcc
cgtgcgcagcgtggcggcatctcgtttgaaagcgaagaagcgaagtttatcttcaacgcc
gagcgccgtattgaacgcgttgagcaaaccgttcgtaacgacgcgcataaacttatcgaa
gagtgcatgatcctcgcgaatatcgcggcggcacgctttgtcgagaaaaacaacgaaccg
tcactgttccgtgaccacgatcgtccaactaacgaggcgatcacgtcattccgttcggtg
ctggctgaactaggtctggaactgcctggcgggcagaaaccagaaccgcgtgattatgct
gaattgctgaactcgattgccgatcgcccggatcatgaaatgctgcaaaccatgctgctg
cgttccatgaaacaggccgtttacgatccagaaaaccgtggtcacttcggcctggcgctg
caatcttacgcgcactttacctcgccaatccgccgttatccggatttgctgttacaccgt
gcgattaagtatctgctggcgaaagagcagggtcatacgggcaatagcaccgagtctggt
ggctggcactacgagatggacgaaatgctgcaactgggccagcattgttccatggcagaa
cgccgcgccgatgaagcgacacgtgatgtagctgactggctgaaatgcgactttatgcag
gatcaggtcggtaatacctttactggcatcatcgccagcgttaccggttttggtttcttt
gttcgtctgacggatctgtttatcgatggtctggtacacgtttccactctcgataatgac
tactaccgtttcgaccaaatcgggcagcgcctgattggtgaatccggtggtcagacttat
cgcctgggtgaccgtgtcgaagtgcgcgttgaagccgtccacatggacgagcgtaaaatt
gattttgctctgatttccagcactcgtgttcctcgtggcgcgggtaaaactgagaaagac
cgagcgaaaaaaggcgcaaacggcaacgggccaaaacgtcgtcagggcggtaaacgcacg
aacttcgagccagacagcactttccgtaaagagaaagggccagccaagccgaagaaagcg
aaagccgagaaaagcgccgacacaaaagccgagccgaaagcgaagaaaccaaaaacgcag
tcggacaaaactcgtaaaatagccgccgctactaaagccaagcgcgctgcgaagaagcag
ccgagctaa
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