Buttiauxella sp. 3AFRM03: D8682_14750
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Entry
D8682_14750 CDS
T05676
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
buf
Buttiauxella sp. 3AFRM03
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
buf03016
]
D8682_14750
Enzymes [BR:
buf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D8682_14750
Transfer RNA biogenesis [BR:
buf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D8682_14750
Prokaryotic type
tRNA splicing ligases
D8682_14750
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AYN28122
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All DBs
Position
2842850..2844085
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AA seq
411 aa
AA seq
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MESKILNDYQLLNQTNGAPIKMWTQGVPVEPRAQEQLLNTAKMPFIFKHMAVMPDVHLGK
GSTIGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLLASDLPDNLAGLRSAIEQAVPHGRTS
TRSKRDRGAWETPPQEVDKHWAELAPRFKHLTDKYPQLAKTNNYQHLGTLGTGNHFIEVC
LDETQQVWVMLHSGSRGVGNAIGSLFISLAQQDMQQHIANLPDRNLAYFEEGSQHFEDYM
EAVSWAQDFARHNREVMMAHTLAALSRIVTKPFTTQQEAVNCHHNYVQQETHFGESVLVT
RKGAVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRKEAKKRFSVADQ
IRATAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcaaaatattgaacgattaccaacttttgaatcaaaccaacggtgcgccgata
aaaatgtggactcagggcgtacctgtggaacccagagcacaagagcaattgctgaataca
gcaaaaatgccttttatttttaaacacatggccgtaatgccggatgtacatctgggtaag
ggttcgactatcggcagcgttattcccacccgtggtgcaattatcccggcggccgttggc
gttgatattggctgtggaatgattgccgtgcggacgtcactgctggcaagcgacctgccg
gataaccttgccggtttgcgtagcgccatcgaacaggcggtaccacatgggcgtacttca
acccgttcgaaaagggatcgtggagcatgggaaacccctccgcaagaagtagacaagcac
tgggccgaactggcaccacgcttcaagcacctgacggataagtacccgcagttggcgaaa
accaataactatcagcacctcggaacactgggaacaggtaaccattttattgaggtgtgc
cttgatgaaacacagcaggtctgggtaatgctgcatagcggatcgcgcggagtaggcaac
gccatcggttcgttgtttatctcgctcgcacagcaagatatgcagcagcacatcgccaat
ttgccggatcgtaacctcgcctactttgaagaagggagccagcattttgaggattacatg
gaggcagtcagttgggcgcaggattttgcccgccataaccgtgaagtgatgatggcacac
acgttggcagcgctttcgcgcattgtgacaaaacccttcaccactcagcaggaagcggtt
aactgccaccacaactatgtgcagcaggaaactcattttggtgaatcggtactggtgaca
cgtaaaggtgcagtctctgcgcaaaaaggacagatggggattattcccggttcgatgggg
gcaaaaagctttatcgtgcgcggcctgggtaatgaagaaagcttctgctcatgcagccac
ggcgcggggcgtactatgagccgcaaagaggcaaaaaagcgctttagcgtagcggatcaa
atccgcgccacggcccatgtggaatgccgtaaagacagcgacgttatcgacgaaataccg
atggcttacaaagatattgacgcagtaatggcggcgcagtcttcgctggtagaaattgtt
cacactttgcgccaggtcgtgtgtgtaaaaggataa
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