Buttiauxella sp. 3AFRM03: D8682_17780
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Entry
D8682_17780 CDS
T05676
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
buf
Buttiauxella sp. 3AFRM03
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buf03019
]
D8682_17780 (csrD)
Messenger RNA biogenesis [BR:
buf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D8682_17780 (csrD)
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Paralog
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GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
NADH5_C
Motif
Other DBs
NCBI-ProteinID:
AYN28664
UniProt:
A0A3G2IGR1
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Position
3481576..3483516
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AA seq
646 aa
AA seq
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MRLTTKLSAFMTLLTGLAIFVTLVGCSLSFFNAMHFKVHQRVVAVATIIDNDLVSSSPEE
LINRLNEVMVPIDITEVKFKIGGNTVYQHQLSQSYRLLGNSYSFRTVTVELMKHPGMFLS
LTYRDPVANYYNSLFTTVPLSITVGFMLIVLFFAIRWMKKQLAGQELLENRARRILNGER
GVEVRGSVLEWPPKASSALDLLLSDLQNANDQRSRMDTLIRAFAAQDAKTGLNNRLFFDN
QLATLLDEQEQVGAHGVVMIIRLPDFDTLHETWGRAAVEEYLFTLINLLSTFVMRYPGAL
LARYFRSDFAVLLPHRTLKEADSIASQLLKAVDTLPPTRMLDRNDMMHIGICAWRSGQTK
EQVMENAEVATRNASLQGANSWSVYDDSLPEKGRGNVKWRTLIEQVLQRGGPRFYQKPAV
MRNGYVHHREIMCRIFDGEQEVLAAEYLPMVKQFGLAEQYDRQTIARLLPLAGFWPEETL
AIQVSVESLIRAPFQRWLRDALMQSEKSLRRRILFELAEADVCQHISRLQPVIRLIKALG
ARIAVSQAGLTVVSASYIKELDVELIKLHPGLVRNIEKRTENQLFVQSLVEACNGTQTQV
FAVGVRTRSEWQTLVEKGVAGAQGDFFAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaactttctgcttttatgacgttgctgactggcctcgctattttt
gtgacgctcgtgggttgttcattaagcttctttaatgcgatgcattttaaagttcatcag
cgtgtggtggcggttgccacaatcattgataacgatttggtttcaagctctccagaagaa
ctgatcaatcgcctcaacgaagtgatggtgcccattgatatcaccgaggtgaaattcaaa
ataggcggcaacacggtttaccaacatcagttgagccaatcctaccgtttactgggcaat
agctacagttttcgtaccgtgactgttgagttaatgaagcatccggggatgttcctctct
ctcacctatcgggatcctgtcgcgaattactacaactcacttttcactaccgttccactt
tctatcacggttggcttcatgcttatcgtgctgttttttgctatccgctggatgaaaaag
cagctcgccgggcaagagttactggagaaccgagcgcgacggattctgaacggtgaaaga
ggcgttgaggtgcgcggatcggtactggaatggcctccgaaagccagtagcgctttggac
ttgttgctttccgatctgcaaaacgcgaacgatcaacgcagcagaatggacaccttgatt
cgtgcttttgcggcgcaggatgcgaaaacaggcctgaataatcgtctgttttttgataat
caactggcgacgttgctggatgaacaagagcaagtgggcgcgcatggtgtagtgatgatc
atccgtctgcccgattttgacaccctgcatgaaacatgggggcgcgcggcggtagaggag
tacttatttaccctcatcaatctgttgtcgacatttgtgatgcgttatcccggcgcatta
ctggcacgttatttccgcagcgattttgccgttttgttacctcatcgcacattaaaagaa
gccgatagtattgccagccagttgctgaaagccgttgataccttgccgccaacccgaatg
ctcgaccgcaatgacatgatgcatatcggtatttgtgcatggcgtagcgggcaaaccaaa
gagcaggtgatggagaacgcggaagtcgcgacgcgtaatgcttcgttgcaaggggcgaac
agttggtcggtctatgacgatagtttgccggaaaaagggcgcggcaatgtgaaatggcgt
acgctcattgagcaagtgttacagcgcggtggcccacgcttctatcaaaaaccggcggta
atgcgtaatggctacgtacatcatcgtgaaatcatgtgtcggatttttgacggcgaacaa
gaagtgctggcggcagaatatttgccgatggtgaagcagtttggtttagcggaacaatat
gaccggcaaaccatcgcccgattgttacctttagccggtttctggcccgaagaaacactg
gctattcaggtgtctgtagaatcactgattcgcgctccgttccagcgttggttgcgtgat
gcgttgatgcagtcagaaaaatcgcttcgacgacgtattctttttgaacttgcagaggca
gatgtctgtcaacacatcagccgtttgcagcctgtgattcgcttgattaaagctttgggt
gctcgtattgctgtctcccaggcgggtttgaccgtagtgagcgcttcttatattaaggag
ttggatgtggagttgataaagctgcatccggggctcgtgcgaaacattgagaaacgaact
gaaaatcagttgtttgtacagagcctggttgaggcctgtaatgggactcagacgcaagtt
tttgcggtcggagtcagaacgcgaagtgaatggcagacactggtggagaaaggcgtggcg
ggtgctcaaggtgatttttttgcggcatctcaaccactagacagcaacgtgaaaaaatat
tcgcaaagatactcggtttaa
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