Buttiauxella sp. 3AFRM03: D8682_18200
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Entry
D8682_18200 CDS
T05676
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
buf
Buttiauxella sp. 3AFRM03
Pathway
buf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8682_18200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buf03019
]
D8682_18200
03009 Ribosome biogenesis [BR:
buf03009
]
D8682_18200
Enzymes [BR:
buf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D8682_18200
Messenger RNA biogenesis [BR:
buf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D8682_18200
Ribosome biogenesis [BR:
buf03009
]
Prokaryotic type
rRNA helicases
D8682_18200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
DRTGG
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AYN28744
UniProt:
A0A3G2IGY2
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All DBs
Position
3565428..3567419
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AA seq
663 aa
AA seq
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MTDIIETTTIETTFSDLGLNDSILKALNDLGYEKPSPIQAECIPQLLAGRDVLGMAQTGS
GKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQR
YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMGFIEDVETIM
AQIPEGHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVHGMRKNE
ALVRFLESEDFDAAIIFVRTKNATLEVAEALEQSGYNSAALNGDMNQALREQTLERLKDG
RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER
RLLRNIERTMKLTIPEVELPNRELLSERRLAKFAAKVQQQLESSDLDLYRGLLAKIQPSA
ESEEALDMETLAAALLKMAQGERPLILPPDAPMRPRREFRERDERFERSDRAPRGDRGDR
APRGDRPERSDRPQRDGDAPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISS
RYIGNIKLFGTHSTIELPKGMPGEILQHFTRTRILNKPMNMQLMGDAQPRTDRGGERRGG
GAGAGAGRSFGGGGERREGGRGPRRDGPGAGAPRSFSGERREGGRGPRREDGAAPARRRT
TEA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatcatcgagactactactatcgaaactactttttctgatctgggtcttaac
gactccatccttaaagccctgaacgatctgggttacgaaaaaccatctccaatccaggca
gagtgtattccacagctgctggctggccgcgatgtactgggtatggcccagacgggtagc
ggcaaaactgcagcgttctctttaccgctgctgcacaaccttgatccagagctgaaagca
ccacaaatcctggtgctggcaccgacccgcgaactggcggttcaggttgctgaagccatg
acggacttctctaaacatatgcacggcgtaaacgtggtagccctttacggtggccagcgt
tatgacgtgcagctgcgcgccctgcgtcagggaccacaaattgttgttggtaccccaggt
cgtctgcttgaccacttaaaacgcggtacgctgaatctgtccaacctgaaaggtctggta
ctggacgaagctgatgaaatgttgcgtatgggcttcatcgaagacgttgaaaccatcatg
gcgcagatcccagaaggtcatcagaccgctctgttctctgcaactatgccagaagcgatt
cgtcgtattactcgtcgcttcatgaaagatccgcaggaagttcgcattcaatctagcgta
acgactcgcccggacatcagccagagctactggactgtccacggtatgcgtaaaaatgaa
gcgctggttcgcttcctggaatctgaagattttgatgcggcgatcattttcgtacgtacc
aaaaacgcgactctggaagtggctgaagcactggaacaaagcggctataacagcgcagca
ctgaacggtgacatgaaccaggcactgcgtgagcaaaccctggagcgtctgaaagacggt
cgtctggacatcctgattgcaaccgacgttgcggctcgtggcctggacgttgagcgtatc
agcctggttgttaactatgacatcccgatggactcagagtcttacgttcaccgtatcggc
cgtaccggtcgtgcaggtcgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgt
cgtctgctgcgcaacatcgaacgcaccatgaagctgactattcctgaagttgaactgcca
aaccgtgaactgctgagcgagcgtcgcctggctaagtttgccgctaaagttcagcagcaa
ctggaaagcagcgatctggatctgtaccgtggcctgctggcgaaaatccaaccttctgct
gaatcagaagaagcgctggatatggaaacactggctgcagcactgctgaaaatggcacag
ggcgaacgtcctctgatcctgccaccagatgcaccgatgcgtccacgtcgtgaattccgt
gagcgtgatgagcgtttcgaacgttcagaccgtgctccacgtggtgaccgtggtgatcgt
gcaccacgcggtgatcgtccagagcgttcagatcgtccacagcgtgatggcgatgcacca
cgtcgtgaacgtcgtgacgttggcgatatggaactgtatcgcatcgaagttggccgtgat
gatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggcgatatcagcagc
cgttacattggtaacatcaagctgttcggtacccactcaaccatcgagctgccaaaaggc
atgccaggtgagatcctgcagcactttacccgtactcgtattctgaacaaaccaatgaat
atgcagttgatgggtgatgcacagccacgtactgaccgtggcggcgaacgtcgtggcggc
ggtgctggtgcaggcgcaggccgtagcttcggtggtggtggtgagcgtcgtgaaggcggt
cgtggtccacgtcgtgacggtccaggtgctggcgcaccacgtagcttcagcggcgaacgt
cgcgagggcggtcgtggcccacgtcgtgaagacggtgcagctcctgctcgtcgtcgtacc
acagaagcataa
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