Buttiauxella sp. 3AFRM03: D8682_21245
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Entry
D8682_21245 CDS
T05676
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
buf
Buttiauxella sp. 3AFRM03
Brite
KEGG Orthology (KO) [BR:
buf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
buf03009
]
D8682_21245 (srmB)
Enzymes [BR:
buf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D8682_21245 (srmB)
Ribosome biogenesis [BR:
buf03009
]
Prokaryotic type
rRNA helicases
D8682_21245 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
AAA_11
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYN29280
UniProt:
A0A3G2IIB1
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All DBs
Position
complement(4237929..4239251)
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AA seq
440 aa
AA seq
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MTVTTFSELELDESLLLALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLL
PVLQHLVDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIETIAAETRW
RKQTMLFSATLEGDAIKNFAERLLEDPVEVSATSSTRERKKIHQWYYRADNVEHKTALLV
HLLKQPDTTRSIVFVRKRDRVHELVAWLREAGINTCYLEGEMVQMKRTEAIKRLTDGRVN
VLIATDVAARGIDIPEVSHVFNFDMPRTADTYLHRIGRTGRAGLKGIAISLVEAHDHLLL
GKVTRYMKEPMKSRIIEELRPTTRAPSEKLTGKPSKKVLAKREEKKKDDKEKPRVKVRLR
DKKNVGKRRKPSSAKTESAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaactggaacttgacgagagcttgttgctcgcgctccag
gacaagggctttacccgcccgacagctattcaggctgccgccattccacctgcacttgaa
gggcgtgatgtccttggttccgcaccaaccggtaccggtaaaacagccgcttatttgctg
cctgtgttacagcatttggtcgatttcccgcgtaagaagtctggaccaccacgtattttg
attgtcacgccaacacgtgaactggcaatgcaagtagccgatcatgctcgtgaactggca
aaacatacccatcttgatatcgcaaccatcacgggtggcgtggcatatatgaaccacgct
gaagtgttcagcgaaaaccaggatatcgttgttgcaacaacgggtcgcctgctgcaatac
attaaagaagaaaactttgattgccgtgcagtagagacactgattcttgatgaagccgat
cgcatgttggatctgggctttgcgcaggatattgaaaccattgctgctgaaactcgctgg
cgcaaacaaaccatgctgttctctgcaacgctggaaggcgatgcgattaagaatttcgca
gaacgtttgttagaagatccagttgaagtttccgcgacatcatcaacacgcgagcgcaag
aaaatccaccagtggtactaccgcgccgacaacgttgagcacaaaactgcactgctggtg
catttgctgaaacagccggataccacccgttcgatcgtttttgttcgcaaacgtgaccgt
gtgcatgagctggttgcctggctgcgtgaagcgggtatcaacacctgctacctcgaaggc
gaaatggtgcagatgaagcgtaccgaagctatcaagcgtttgactgatggccgcgtgaac
gtattgatcgctacagatgttgccgcacgtggtattgatattccagaagtcagccatgtc
ttcaactttgatatgccgcgtacagccgatacttacctgcaccgtattgggcgtacaggc
cgtgctggcctcaaaggaatcgctatttctctggttgaagcgcatgaccatttgctactt
ggcaaagtgacgcgttacatgaaagaacccatgaaatcgcgcataattgaagagctgcgc
ccaacgacccgtgcaccaagtgagaagctcactggtaagccgtcgaagaaagtgctcgct
aagcgtgaagaaaagaaaaaagacgataaagaaaagccgcgtgtgaaggtccgtctacgc
gataaaaagaatgtcggtaagcgccgtaaaccaagcagtgcgaaaaccgaatccgctgaa
taa
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