Burkholderia sp. CCGE1001: BC1001_0962
Help
Entry
BC1001_0962 CDS
T01424
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1001_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bug03019
]
BC1001_0962
Enzymes [BR:
bug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BC1001_0962
Messenger RNA biogenesis [BR:
bug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1001_0962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Fe-ADH
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADX54413
LinkDB
All DBs
Position
1:1068609..1070069
Genome browser
AA seq
486 aa
AA seq
DB search
MSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAV
VFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSPNEKKQLADIEKLIKRPLEVQRLTVDTPVRHHHEERAPRRERSEGRDERGGRRRAGAP
SGSFDRPHHHRAQPVDDFFLKPYEPSPASVRKVEEAEAARSAPQKPSSKQPLAALLGGFG
MPRKSS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacgcccagcactgcgacttttgatcaattcggtctcgccccc
gacatcctgaaagcggtcaaggaatcgggctacaccacgcccacgccgatccaggcacag
gcgattcctgtcgttctggcgggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagacggcgagcttttcgctgccgatcatccagcgcctgttgccgcacgcgagcacgagc
gcttcgcctgcccgccacccggtgcgcgcgctgattctcacgccgacccgggagctggcc
gaccaggttgccgcgaacgtgcagtcgtatgcaaagcacacggcgctgcgcagcgccgtg
gtgttcggcggcgtcgacatgaatccgcagtccgaccagttgcgccgcggcgtcgaaatt
ctgattgccacgccgggccgcctgctcgatcacgtgcaacagaagaccgccaacctgggt
caggtgcagattctcgtgctcgacgaagcggaccggatgctcgacatgggcttcctgccg
gacctgcagcgcattctgaatctgttgccgaaagagcgccaaacgctgctgttttcggcc
acgttttcgggcgaaatcaagaagctcgccgccacctacctgcgcaatccgcaaaccatt
gaagtcgcgcgcagcaactccacggcgacgaatgtcacgcagatcgtctatgaagtggcc
gagggcgacaagaccggcgccgtcgtccagctgattcgcgagcgcaatctgaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgtagtcttgagcgcgac
ggcgtggtcgcgacggcgattcacggcgaccgctcgcaaaacgagcgcatgcaggcgctg
gacgctttcaagcgcggcgagatcgaggcgctggtcgcgacagacgtggcggcgcgcggt
ctcgacattgccgagttgccggccgtgatcaatttcgatctgcccttcaacgcggaagac
tatgtgcaccgtattggccgtaccggccgcgcgggcgcttccggcgacgcgctgtccctc
ttcagcccgaacgagaaaaagcagctggcggatatcgagaagctgatcaagcgtccgctc
gaggtgcagcgcctgaccgtggatacgccggtgcgtcatcatcacgaagaacgcgcgccg
aggcgcgaacgcagcgagggccgcgacgaacgcggcggccgccgccgtgcgggcgcgccg
tcgggttcgttcgaccggccgcatcatcaccgcgcgcagcccgtggatgatttcttcctg
aagccgtatgaaccgtcgcccgcttcggttcgcaaggtggaagaggcggaggccgcccgc
tcggcgccgcagaagccgtcttcgaagcagccgctcgcagcgttgctgggcgggttcggc
atgccgcgcaagtcgtcgtaa
DBGET
integrated database retrieval system
