Burkholderia sp. CCGE1001: BC1001_1364
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Entry
BC1001_1364 CDS
T01424
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BC1001_1364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bug03400
]
BC1001_1364
Enzymes [BR:
bug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BC1001_1364
DNA repair and recombination proteins [BR:
bug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BC1001_1364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADX54800
LinkDB
All DBs
Position
1:1553248..1556955
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AA seq
1235 aa
AA seq
DB search
MSAPHRHALAAAELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILVV
TFTKAATAELHERIRGRLAELHRAIELDDDGGDPFIRRLFETTLAPERGIDREAALKVVR
RALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQIEPV
AHAHPAFAAWLVGKRAGPASLDEQLARRLKKPLAQLRWGNTGAQTGADPQTSFDAACELW
HAERDAIVSLLAEAEDRLSKTTHKPDHVSAAIAAWTEYFAQGDCHAPPPRAALKLTASAL
KKATKVKFDPPEHAFFEHAEALSAAVVAAEAAHRARWLELMQSWLDYAPAELAARKRTRR
VVSFDDLLSNLYRALAAHPWLADALRARYPAALIDEFQDTDPLQFAIFSRIFAPAGPLFL
VGDPKQAIYSFRAADLHTYLAARASASARYTLAVNQRSTAPIVEACNRIFEANPQAFVLD
GLDYQPVRAGERRRAPFFDPDGGAGAGDFRIWMLPPGETALTKREAQREASEACAAEIVR
LLRGAREGKVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQTADAPAVADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARAATH
QGIAPTLRWLAAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLR
EPPSSALPNAREYHDPCGDAVLHYGCDDEEAERAARHATREQAAERARLVYVALTRAVYR
CYLVAGTYQSSRSTKESRRSVLNWLVAGAGHDFDDWLAEPPGEAELSSRWQALAGGPLAV
QPLPKVERRQPLESMQDRGAEKRARTHRRPLRDQWRMASFSGLIAAGSKAEEAQPAVEEV
RPDHDEIADELVVTPQPLLAPAAQQISSLAADDILAFPRGAAAGECLHRMFELADFSDPH
SWPDAIRGALRERPAPASPELAPRLPAMMHKLLADVVSTELVPGMTLGQLDPRRRLNELE
FLFAAPSLDFTALRGLLVEHGYPDVALEPGGLRGFVKGFIDMIVEHDGRFWIVDWKSNHL
GDTAQDYGAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYETHIGGYLYLFVRGV
RPHWRDADAAAGVHARRPAFELVALLDAAMIGGGV
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgccgcatcgtcatgcgctggctgccgcggaactggatgtcttcgcgtgttcg
ctcgacggcgtcaatcagatcgaggcgtcggcgggcaccggcaagacatggaacatctgc
gcgctgtacgtgcggctgctgctcgaaaagaatctgaatgccgatcagattctcgtcgtc
acgtttacgaaggccgcgactgccgaactgcatgagcgcattcgcggacggcttgccgag
ctgcatcgcgcaattgaactcgatgacgacggcggcgaccccttcatccgccggctcttc
gaaacgacgctcgcgccggagcgcggcatcgaccgcgaggccgcgctgaaggtggtgcgg
cgggcgctgcgcacgttcgatcaggcggcgattcacaccattcacgcgttctgccagcgc
gcgctgcaggaggcgccgttcgcagcggctatgccgtttgccttcgaaatggaagccgac
gacgccgcgttacgcttcgaaatggccgccgatttctggcgcgagcaaatcgagcctgtt
gcgcatgcgcatcccgcattcgccgcgtggctggtgggcaaacgcgccggccccgcgtcg
ctcgacgaacagctcgcgcggcgcctgaaaaagccgctcgcccaattgcgctggggcaac
acgggcgcgcagacgggcgctgatccgcaaaccagtttcgacgccgcgtgcgagctgtgg
catgcagagcgcgatgccattgtcagcctgctcgcggaggccgaggaccgcctcagcaag
accacacacaagcccgaccatgtaagcgccgcgattgccgcatggaccgagtatttcgcg
caaggcgattgccatgcgccgccgccgcgggccgcgctgaaattgacggcttcggcgctg
aagaaggcgaccaaagtcaagttcgatccgccggagcacgcgtttttcgagcacgccgaa
gcgctgagtgccgccgtggtcgcggccgaagcggcgcatcgcgctcgctggctcgagctg
atgcagagctggctcgactatgcacccgccgaactggcggcacgcaagcgcacgcgccgc
gtggtgtcgttcgacgatctgctgtcgaacctgtaccgggctcttgccgcgcacccgtgg
ctcgcggacgcgttgcgcgcgcgttatcccgccgcgttgatcgacgagttccaggacacg
gatccgctgcagttcgccatcttcagccgcatttttgcgccggcggggccgctatttctg
gtcggcgatccgaagcaggccatctacagtttccgcgcagccgacctgcacacgtatctg
gcggcgcgggcctccgcttcggcgcgctatacgctcgccgtgaaccagcgttccacggcg
ccgatcgtggaggcttgcaatcgtatcttcgaagcgaatccgcaggccttcgtgctggac
gggctcgactatcagccggtgcgcgccggcgagcggcgcagagcgcctttcttcgatccc
gacggcggcgctggcgcgggcgacttccgcatctggatgctgccgccaggcgaaaccgcg
ctgaccaagcgcgaggcgcagcgggaagcgagcgaggcgtgcgcggccgagatcgtgagg
cttctgcgcggcgcccgcgagggcaaggtgacgatcggcgacgcgccgcttgcgccgggc
aatatcgcggtgctcgtacagacgcacaagcagggcagtctcatcaaacgggtgctggcg
gcgtggggcgtcggcagcgtcgagctcgcgcaggcctcggtgtttgcaacgctcgacgcg
gagcagatcgagcgcgtgctggccgctgtcgatacaccgggcgacttgcgccgcttgcgc
gccgccctcgcaaccgactggctcgggctcgacgccgccgcgctctggcgtcttgaacag
accgcggacgcgcccgctgtcgccgacgaccccgcacatgccgccgacgcgatgggctgg
gtcgagcgtttttcgcgctaccgcacgctctggcatgagcgcggttttgccgtcatgtgg
cgcacgctgatgcgcgaactgcgggtcgcgcaacggctcgtcgccgcgccggacggcgag
cggcgcctcaccaacgtcaatcacctcgcggaactcgtgcaggcgcgcgcggccacgcat
cagggcatcgcgccgaccttgcgctggctcgcggcgcagcgtgcccagggcggcggcgaa
gaagcgcaactgcggctcgagtccgatcgcaatctggtgcagatcgttaccgtgcacaag
tcgaaggggctggaatatgcagtcgtgttctgtccgttcctcaacgacggcggattgcgc
gagccgccctcgtcggctttgccgaacgcacgcgagtatcacgatccatgcggcgacgcg
gtgctgcactacggttgcgacgacgaagaggcggaacgcgccgcgcgtcacgccactcgc
gagcaggcggccgagcgggcgcggctcgtctacgtggcgctgacgcgcgccgtctaccgc
tgttatctcgtcgcgggcacgtatcagtcgtcgcgctcgacgaaggagtcgcggcgcagc
gtgttgaactggctcgtggccggcgcgggccatgacttcgacgactggctcgcggagccg
cccggcgaagcggagttgtcttcgcgctggcaggcgctggccggcggtccgctagccgtg
cagccgctgccgaaggtggagcgccgccagccgctcgagagcatgcaggaccgcggcgcg
gaaaagcgcgcgcggacgcatcgccggcccttgcgggatcagtggcgcatggcgagtttc
agcggtctgatcgctgcaggcagcaaggccgaggaagcgcagcccgcagtggaagaagtg
cgccccgatcacgacgaaatagccgatgagctggtcgtgacgccgcagcccctcttagcg
cctgcggcgcagcagatctcgtcgcttgccgcggacgacatactggcgttcccgcgcgga
gcggcggcgggcgagtgcctgcatcgaatgttcgaactcgcggatttcagcgatccgcac
agctggccggatgcgatccgcggtgcgctgcgcgagcgtcccgcgccggcgtcgcctgaa
ctggctccgcggttgccggcgatgatgcacaagctgctcgcggatgtcgtcagcaccgaa
ctcgtgcccggcatgacgctcgggcagctggatccgcggcggcgtctgaacgaactggag
tttctgttcgccgctccatcgctcgattttaccgcgctgcgtgggttgctcgtcgagcac
ggctatcccgatgtcgcgctcgagccgggggggctgcgcggtttcgtcaaaggattcatc
gacatgatcgtcgagcacgacgggcgtttctggatcgtcgactggaagtcgaaccatctg
ggcgataccgcgcaagattacggcgccgcgccgctcgaagcggcgatggcgagccacgcg
taccacctgcaggcgctgctttataccgtcgcgctgcaccgctatctgaagacccgcgtg
cgcgactactcgtacgagacgcatatcggcggatacctgtatctgttcgtgcgcggcgtg
cgtccgcactggcgcgacgccgacgcggcggccggcgtgcacgccagacggccagcattc
gagctggttgcgttgctcgacgcggcgatgatcgggggtggcgtatga
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