Burkholderia sp. CCGE1001: BC1001_1720
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Entry
BC1001_1720 CDS
T01424
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BC1001_1720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bug03400
]
BC1001_1720
Enzymes [BR:
bug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BC1001_1720
DNA repair and recombination proteins [BR:
bug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BC1001_1720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADX55155
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All DBs
Position
1:1980170..1983652
Genome browser
AA seq
1160 aa
AA seq
DB search
MPDIAASSQYSSPVALVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVD
AQRLSQEIGFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPA
TTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLLD
LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSR
WRETFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPPGAQLAFAGDLDAA
IRRFNNDTKQRYNFLSHDRDRPILEPQRLFLTDEDFFTLAKPFARLVLPVNAGGGWSTPL
PNLAIDRHADDPVSALRAYLDTTPNRVLFAAESAGRRETLLQLLADNHLKPASSDSFQDW
LTGDARFSLGVAPLANGFAVPADGIAIITETELYGPLARRAGRRRQEQASNVDSMVRDLS
ELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGA
DPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGHAFALEPKDYVKFAE
SFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALL
SPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINEGSVDIVIGTHKLLS
SDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPE
ARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQ
LHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGT
GEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKDGKEPDLTAPLAATTEINLHAPAILPAD
YCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRFGKLPPQALALVETHRLRLAAKPLGI
SKIDAGEAVIGLQFIPNPPVDAMRIIEMVQKHKHIKLAGQDKLRIETRSPDLAVRVATVK
ETLRALGSPSRGTAAATAAR
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccagatatcgccgcatcatcgcagtactcctcgcccgtcgcgctcgtcaaagccggc
cagcgtttcgccttcgacggcacgcacggctcgtccgacgccctgctgatcgcccgctac
catctcgcttaccgcgagaaggtgccgttgctcgcggttgtgtgcgagagcgccgtggat
gcgcagcgcctgtcgcaggaaatcggctttttcgcgcccgaagcgcgcgtgcgtcttctg
cccgactgggaaacgctgccttacgacacgttttcgccgcaccaggacctggtttccgag
cgtcttgccacgctgcacgatctcggcgaaggccgctgcgacatcctgctcgtgccggcc
accacggcgctgtaccgcatgccgcccgcgtcgtttctcgccgcctacacgttctcgttc
tcccaaggcgaacgcctagacgaggcgaagctgaaggcgcagctcacactcgcgggctac
gaacatgtgagccaggtcgtgcgtcccggcgaatattgcgtgcgcggctcgctgctcgat
ctttatccgatgggctcgcccctgccctaccggatcgacctgttcgacgaccaggtggac
tcgatccgcgcgttcgaccccgacacgcagcgcagcctttatccggtcaaggacgtgcgc
ctcttgccgggccgcgaatttccctttgacgaagccgcgcgcaccgcgtttcgcagccgc
tggcgcgagacgttcgagggcgatccgagccgcgcgtcgatctataaggacatcggcaat
ggcgtcccgtcggcgggcatcgaatattatttgccgcttttcttcgacgagacggccacc
ctcttccactatttgccgcccggcgcgcaactcgcgtttgccggcgatctggacgcggcg
atccggcgctttaacaacgacacgaagcagcgctacaacttcctgtcgcacgatcgcgac
cggcctattctcgagccgcagcgcctctttctcacggacgaggacttcttcacgctcgcc
aaacccttcgcgcgcctcgtgctgccggtcaacgcgggcggcggctggtcgacgcctttg
ccgaacctcgccatcgaccgtcacgcggacgatccggtttccgcgttgcgcgcttacctc
gacaccacgccgaaccgcgtgctgttcgccgcggaatcggcgggccggcgcgaaacgctg
ttgcaactgctcgcggacaaccatctgaaacctgcgtcgagcgacagcttccaggactgg
ctgaccggcgacgcgcgcttctcgctcggtgtggcgccgcttgcaaacggcttcgccgtg
ccggcggacggcatcgcgatcatcaccgagaccgagctttacgggccgctcgcgcggcgc
gcggggcgccgccgccaggaacaggcgagcaacgtcgactcgatggtgcgcgatctgtcc
gagctcaaagtcggcgatccggtcgtgcattcgcagcacggcatcggccgctacatgggc
ctcgtcaccatggacctcggcgaaggcgagaccgagttcctgcacctcgaatacgcgggc
gacagcaagctttacgtgcccgtcgcccaattgcacgtgatctcgcgttatagcggcgcc
gacccggaaagcgcgccgctgcactcgctcggttcgggccaatgggaaaaggccaagcgc
aaggccgcgcagcagatccgcgataccgccgccgagttgctgaacctttacgcgcgccgc
gcggcgcgctcgggtcacgcgttcgcgctcgaaccgaaagactacgtgaagttcgccgag
agcttcggcttcgaggaaacgccggaccaggccgcggccatcgcggcggtgatcggcgac
atgacgagcggcaagccgatggatcgcctcgtgtgcggcgacgtgggcttcggcaagacg
gaggtcgcgttgcgcgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctcctc
tcgcccaccacgctgctcgccgaacagcacacgcaaaccttcacggaccgcttctccgac
tggccggtgcgcatcgccgaattgtcgcgcttcaagtcgacgaaggaagtgaacgccgcg
atccagcagatcaacgaaggcagtgtcgacattgtgatcggcacgcacaagctgctctcg
tcggacgtgcagttcaagcggctcgggctcgtgatcatcgacgaggagcatcgcttcggc
gtgcggcagaaagaggcgctcaaggccttgcgcgcggaggtcgacgtgctcacgctcacc
gctacgccgattccgcgcacgctcggcatggcgctcgaaggcctgcgcgatttctcggtg
atcgcgacggcgccgcaaaagcgccttgcgatcaagaccttcgtgcgtcgcgaggaagaa
agcgtgatccgcgaagccatgttgcgcgaactgaagcgcggcggccaggtgtactttctg
cacaacgaagtagagaccatcgaaaatcgccggcaaatgctcgaggcactcgtgcccgaa
gcacgcatcgcggtcgcgcacgggcagatgcacgagcgcgaactcgaacgtgtgatgcgc
gacttcgttgcgcagcgtgcgaacgtgctgctgtgcacgacgattatcgaaaccggcatc
gacgtgccgagcgcgaacacgatcctgattcatcgcgcggacaagttcgggctcgcgcag
ctgcatcagttgcgcggccgcgtgggacgctcgcatcaccaggcctattcgtatctgctc
gtgcacgatccgcagggattgacgaagcaggcgcagcgccgtctcgaagcgatccagcag
atggaggaactcggctcgggcttctatctggccatgcacgacctggaaattcgcggcacg
ggcgaagtgctcggcgacaagcagtcgggcgaaattcacgaaatcggcttccagctgtac
acggacatgctcaacgacgcggtgaaggcgctgaaggacggcaaggagccggacctgacc
gcgccgctcgccgcgaccaccgaaatcaatctgcacgcaccggccattcttcccgccgac
tattgcggcgacgtgcaggagcgtctgtcgctctacaagcggctcgcgaattgcgagcac
aacgattcgatcgacggcattcaggaagagctgatcgaccgcttcggcaagctgccgccg
caggcgctggcgctcgtggaaacccatcggctgaggcttgcggccaagccgttgggcatc
tcgaagatcgacgcgggcgaagcggtgatcggcctgcagttcattccgaatccgcccgtc
gacgccatgcgtatcatcgagatggtgcagaagcacaagcacatcaagctggcgggccag
gacaagctgcgcatcgaaacgcgcagtcccgatcttgccgtgcgcgttgcgaccgtgaag
gagaccttgcgcgcgctcggttcgccgagccgcggcaccgcggcggccacggcggcgcgg
tag
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integrated database retrieval system
