Burkholderia sp. CCGE1001: BC1001_1811
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Entry
BC1001_1811 CDS
T01424
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1001_1811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bug03021
]
BC1001_1811
03019 Messenger RNA biogenesis [BR:
bug03019
]
BC1001_1811
Transcription machinery [BR:
bug03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BC1001_1811
Messenger RNA biogenesis [BR:
bug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BC1001_1811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
ADX55244
LinkDB
All DBs
Position
1:2078701..2079969
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AA seq
422 aa
AA seq
DB search
MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRRGG
GS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtctccgaattgatcgagatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaattgatgttcgccattctaaaa
aaacgagccaaaacgggcgacacgatcttcggcgacggcacgcttgaagtgctgccggac
ggcttcggcttcctgcgttcgccggaaacctcctacctcgccagcacggatgacatctac
atcagcccgtcgcaaatccgccgcttcaacctgcatacgggtgacacgatcgaaggcgaa
gtgcgcacgccgaaagacggcgagcgctattttgcgctggtgaaggtggacaaggtcaac
ggccagccgccggaggcctcgaagcacaagatcatgttcgaaaacctcacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaagagaatgtgacgggccgc
atcatcgacatgatcgcgccgatcggcaagggtcaacgcggcctgctcgtcgcctcgccg
aagtcgggcaagacggtgatgcttcagcacatcgcgcatgccatcaagcagaatcatccc
gacgtcgtactgttcgttctgctgatcgacgagcgcccggaagaagtgacggaaatgcag
cgctcggtggcgggcgaagtgatcgcctccacgttcgacgaacccgccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgccttgtcgaaatgaagaacgacgta
gtcattctgctcgactcgatcacgcgtctcgcgcgcgcgtacaacacggtcgtgccggct
tcgggcaaggtgctgaccggcggtgtggacgcgaacgcgctgcaacgtccgaagcgcttc
ttcggtgccgcgcgcaatatcgaggaaggcggctcgctcaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgtcgtctcgccgagaagcgcgtgtatccgtccatcaatctg
aacaagtcgggcacccgccgcgaagaactgctcatcaagcccgaagtgctgcaaaaaatc
tgggtgctgcgcaagttcattcacgacatggacgaagtcgagtcgatggaattcctgctc
gacaagatccgccagaccaagagcaactccgagttcttcgacatgatgcgtcgcggcggc
ggcagttaa
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