Burkholderia sp. CCGE1001: BC1001_2958
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Entry
BC1001_2958 CDS
T01424
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1001_2958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bug03019
]
BC1001_2958
Enzymes [BR:
bug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BC1001_2958
Messenger RNA biogenesis [BR:
bug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1001_2958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF8086
Sacchrp_dh_NADP
HI1480
P-loop_SecA
CMS1
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
ADX56372
LinkDB
All DBs
Position
1:3366184..3367776
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AA seq
530 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALKSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK
DIEKLIKRPVPQEVIPGFEPDPTAKPEPILRRGQGGGGRSPRQGQGQGAPKGGNGGAARG
ARGSSQGANQGTAQGTAQRSGQRPTNGQQQPKPQAAKPQGAKPAGNGGQPRRDGQRHDDR
PRAIAHEGGVAHAPRKPQGSNPGALLGGAAKPRTDAPRGAHPARSGQRGR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgttggtccgcgctgtacacgaactcggc
tataccactccgactcccatccagacacaggccattccggccgtgctcaacggcggcgac
ctgctggccggcgcacagacgggcaccggcaagacggctggcttcacgctgcccatcctg
cagcgtcttcattcgatgccgccgctcgccgcggcctcgggcaagcgcgccgtgcgcgcg
ctgattctcacgcctacgcgcgaactggccgcgcaggtcgaagaaagcgtacgcgcctac
ggcaaatatctgaagctgaagtcgacggtgatgttcggcggcgtcggcatcaatccgcag
atcggcgcattgaagagcggtgtggatatcgtcgtggcaacgcctggccgtttgctcgac
cacatgcagcagaagaccatcgacctgtcgcatctcgagatcctcgtgctcgacgaggcg
gaccgcatgctcgacatgggcttcatccacgatatcaagcgcgtgctggccaagctgccg
ccgaagcggcagaacctgctgttctcggccaccttctccgacgagatcaaggcgctcgcc
gacaacctgctcgactcgcccgcgctcatcgaagtcgcgcgccgcaatacgaccgctgaa
accgtcgcgcaaaaaatccacccggtggatcgcgacaagaagcgcgagctgctcacgcat
ctcatcaagcagcacaactggtttcaggtgctggtgttcacgcgcaccaagcacggcgcg
aatcgccttgccgaacagctgacgaaggacggcatcagcgcgctcgccattcacggcaac
aagagccagtcggcgcgtacccgcgcattggccgagttcaaggacggcacgctgcaggtg
ctggtcgccaccgacatcgccgcgcgcggcatcgacatcgaccagttgccgcacgtcgtc
aacttcgatctgccgaacgtgcctgaggactacgtgcaccgcatcggccgtacgggtcgc
gccggcgcgacgggtgaagcggtgtcgctcgtgtgtgtcgacgaattgcagttgctgaag
gacatcgagaagctcatcaaacgcccggtgccgcaggaagtgatccccggcttcgagccg
gacccgacggcgaagccagagccgatcctgcgccgcggtcagggcggcggcggacgttcg
ccgcgtcagggccagggccaaggagcaccgaagggcggcaacggcggtgcggcaagaggg
gccagagggtcgagccaaggcgcgaatcaaggcacggcgcaaggcacggcgcagcgctcg
gggcagcgtcccacgaacggccagcaacagcccaagccgcaagccgcaaaaccgcaaggc
gcgaagcccgccggcaacggcggacaaccgcgccgtgacggccagcgtcacgacgaccgt
ccgcgcgccatcgcgcacgaaggcggcgtggcgcatgcaccgcgcaagccgcaaggcagc
aatccgggcgcgctgctgggtggcgccgccaagccgcgtacggacgcgccgcgcggcgct
catccggcgcgcagcgggcagcgcgggcgctaa
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