Burkholderia sp. CCGE1001: BC1001_4961
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Entry
BC1001_4961 CDS
T01424
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BC1001_4961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bug03021
]
BC1001_4961
Transcription machinery [BR:
bug03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BC1001_4961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7853
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
ADX58343
LinkDB
All DBs
Position
2:1538327..1540369
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AA seq
680 aa
AA seq
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MTKKLNEVPVDDDATQSEETPVAASGKVEKARARDRRAKEKALLKDAFSSSQPGTVEELE
ERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDADAEDADGFSVQ
EAEAIESEDEDEEEEDEEDEEEDDGTAQATANAAQMEALKRASLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDK
CGMPRAEFIARFPGSETDLEWADKIVAEGHSYSAILTRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaatgaagtacccgtcgatgacgacgcaacccagagcgaagaaacc
cctgtggccgcttccggcaaagtggaaaaggccagggcacgcgaccgtcgcgccaaggaa
aaggcgctgctgaaagacgcgttttcgtcgtcgcagcccggcacggtcgaggaactcgag
gagcgccgttcgaaactccgcgcgctcatcaagctcggcaaggagcgcggctttctcacg
tacgctgaaatcaacgatcacctgccggacaactttaccgagaccgaggcgatcgaaggc
attatcagcacgttcaacgacatgggcgtggcggtctacgagcaggccccggacgctgaa
acgctgctgctgaacgacaacgcgcccgccgcttcgtccgacgacgaagtggaagaggaa
gccgaagtcgcgctgtccaccgtcgactccgaattcggccgcacgaccgaccccgtgcgc
atgtacatgcgcgaaatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgaaatc
gccaagcggattgaagacggcctgaagcacatggtcatggccatctccgcgtgcccgacc
acgatcgccgacattctggccatggccgagcgcgtcgcgaacgaggaaatccgcatcgac
gaactggtcgacggcctgatcgacgccgacgcggaagacgccgacggcttctccgtgcag
gaagcggaagcgatcgaaagcgaagacgaggacgaagaggaagaggacgaagaggacgag
gaagaagacgacggcacggcgcaggccacggccaacgcggcgcaaatggaagcgctcaag
cgtgcgtccctcgaaaaattcgccctgatcagcgaatggttcgacaagatgcgtcgcgcg
ttcgagaaggaaggctacaagtccaagtcgtatctgaaggcgcaggaaaccatccagaac
gagctgatgaccattcgtttcacggcgcgcactgtcgagcgtctgtgcgacacgctgcgt
gcgcaagtggacgaggtgcgtcaggtcgagcgtcagattttgcatacggtggtcgacaag
tgcggcatgccgcgcgcggaattcatcgcgcgttttccgggtagcgaaacggacctggag
tgggccgacaagatcgtcgccgaaggtcattcgtacagcgcgatcctcacgcggaacatt
ccggccattcgcgagcagcaacagcgtctgctggatttgcaggcgcgcgtggtgctgccg
ctgaaggacctgaaggaaaccaaccgtcagatggcggccggcgaactgaaggcgcgtcag
gccaagcgcgaaatgaccgaggcgaacctgcgtctcgtgatttcgattgcgaagaagtac
acgaaccgcggtttgcagttcctcgacctgattcaggaaggcaacatcggcctgatgaag
gcggtggacaagttcgaataccgtcgcggctacaagttctccacgtatgcaacgtggtgg
atccgtcaggccattacgcgttcgatcgcggaccaggcgcgcaccatccgtattccggtt
cacatgatcgaaacgatcaacaagatgaaccgcatctcgcgtcagattctgcaggaaacc
ggcctcgagccggatccggcaacgctcgccgagaagatggaaatgccggaagacaagatc
cgcaagatcatgaagatcgcgaaggagccgatctccatggaaacgccgatcggcgacgac
gacgattcgcatctcggcgacttcatcgaagatacgaatacggtcgcgcccgcagacgcc
gcgttgcacgccagcatgcgcgacgtcgtgaaggacgtgctcgattcgttgacgccgcgc
gaagcgaaggtgttgcgcatgcgcttcggtatcgaaatgagcaccgatcacacgcttgaa
gaagtcggcaagcagttcgacgtgacgcgtgagcggatccgccagatcgaggcgaaggcg
ctgcgcaagctgcgtcatccgagccgctcggacaagctgaagtcgttcctcgaagggaac
tga
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