Burkholderia sp. CCGE1001: BC1001_5091
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Entry
BC1001_5091 CDS
T01424
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bug
Burkholderia sp. CCGE1001
Pathway
bug02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bug00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BC1001_5091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bug03021
]
BC1001_5091
Transcription machinery [BR:
bug03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BC1001_5091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CDPS
YjfB_motility
Sigma70_r4_2
FUSC
DUF4600
THOC7
Motif
Other DBs
NCBI-ProteinID:
ADX58472
LinkDB
All DBs
Position
2:complement(1679157..1681151)
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AA seq
664 aa
AA seq
DB search
MNPFDREDSQHETAAYTKAPSGRTPKGKGAGKAIPVAAELPPQQAEERQRQMRALIQLGK
EQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLLLNSNAPAVVSD
DQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAKRIEDGLHEMVQA
IAGCPLAISAILASAQQVADGELRIDELVDGLNEDNVAAEEENVSADASADEDTDAEDDE
DSDGDDDVGPADSSAADEARLKQLTSDCLEIFAQVGILYDQMNASHTRGDVSSKAYQKAR
EEIQQHLAKIRFTARTIDRLCGDVQHQVAQVRAIERNILQIVVTKSGMPREKFIESFSGH
EADLGWTERAARGNTSYGAALERHLPAIQSEQQKLIDIEATVSLPLKHLKEINRQMVAAE
SKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFST
YATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMDL
SEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDALD
SLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADRLKS
FLDR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccttttgatcgcgaagattcgcaacacgaaaccgccgcctacacgaaagctccg
tcgggccgcacgccgaagggcaagggcgcgggtaaagcgatccccgtggcggccgagctg
ccgccgcagcaggccgaagagcgtcagcgccagatgcgcgcgctcattcagttgggcaag
gagcaaggctacctgacccacgcgcagatcaacgaccacctgcccgacaacttcgcgcag
acggcggcgatcgacagcatcgtcagcgcattcaacgacatgggcgtgcaggtctacgag
caggccccggacgctgaaacgctgctgctgaactcgaacgcgccggccgtcgtgtcggac
gaccaggcggacgaggaaacagaagttgcattgtccacggtggactccgaattcggccgc
acaaccgaccctgtgcgcatgtacatgcgcgaaatgggcgcgaccgaactgctcacgcgc
gcgggcgaaattgccatcgcgaagcgtatcgaagacggtctgcacgaaatggtgcaagcc
atcgccggctgtccgctcgccatttccgccattctggccagcgcccagcaggtcgcggac
ggcgaactgcgcatcgacgaactggtcgacggcctgaacgaagacaacgtcgcagctgaa
gaagagaacgtcagcgccgacgcctcagcagacgaagacacggacgccgaagatgacgaa
gacagcgatggcgacgacgacgtcggcccggccgattcctcggcggctgacgaagcacgc
ctgaagcaactcacgagcgactgcctcgaaatcttcgcgcaggtcggcattctgtacgac
cagatgaacgcctcgcacacgcgcggcgacgtgagctcgaaggcataccagaaggcgcgc
gaagagatccagcagcatctcgcgaaaatccgcttcacggcgcgcaccatcgaccgcctg
tgcggcgacgtgcagcatcaggtcgcgcaagtccgcgcgatcgagcgcaacattctgcaa
atcgtcgtcacgaagagcggcatgccgcgcgagaagttcatcgaatcgttctcgggtcat
gaggccgatctcggctggaccgaacgcgcagcgcgcggcaacacgtcgtatggcgcggcg
ctcgagcgccacctgccggccatccagtcggaacagcagaaactgatcgacattgaagcc
accgtttcgctgccgctcaagcatctgaaagagatcaaccgccagatggtcgcggccgaa
tcgaagatgcgcaaggcgaagagcgaaatgatcgaggcaaacctgcgtctcgtcatttcc
atcgcgaagaagtacgtcaatcgcggcatgctgttcctcgacctgatccaggaaggcaac
atcggcctgatgaaggcggtggacaagttcgaatatcgccgcggctggaagttttccacg
tatgcaacgtggtgggtccgtcaggccgtgacgcgttcgctcgccgaccaggcgcgcacg
atccgcgtgccggtgcacatgatcgaaacgatcaacaagctgaaccgcatttcgcgcgag
atcctgcagcagaccggtcaggaagcgcatccgtccgtgctggcggaacgcatggatctg
tcggaagagaaagtgcgcggcattctgaagatcgcgaagcagccggtctcgatggaaacg
cccgtcggcgatgacggcgacgccacgctcggcgacatgatcgaagactccgcggcttcg
tcgccggcggatgcggccatgcaggccgacctgcgcgctgccatcgacgacgcgctcgat
tccctgtcgccgcgtgaagcgaaggtgctgcgtatgcgctacggcatcaacacgaagtcg
gaccacacgctggaagaagtgggcaagcagttcgacgtcacgcgcgagcgcattcgccag
atcgagagcaaggccatgcgcaagctcatgcatccgagccgtgcagaccgcctgaagtcg
ttcctcgaccgctaa
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