KEGG   Burkholderia sp. PAMC 28687: AX768_08225
Entry
AX768_08225       CDS       T05699                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bui  Burkholderia sp. PAMC 28687
Pathway
bui03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bui00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AX768_08225 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bui03021]
    AX768_08225 (rho)
   03019 Messenger RNA biogenesis [BR:bui03019]
    AX768_08225 (rho)
Transcription machinery [BR:bui03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AX768_08225 (rho)
Messenger RNA biogenesis [BR:bui03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AX768_08225 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB S1CSD-TOTE-2 AAA_25 AAA_22
Other DBs
NCBI-ProteinID: AMM14090
LinkDB
Position
1:1798955..1800220
AA seq 421 aa
MHLSELKSQHVSALIEMANGLEIENANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQAPEASKHKIMFENLTPLHPNKPLPLEREMRGEENVTGRIIDMISPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKSNHPDIVLFVLLIDERPEEVTEMQRSVVGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPDLLQKVWVLRKFIHDMDEVESMEFLLDKIRQTKNNAEFFDLMRRGG
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcatttatccgagctcaagtctcagcacgtctccgcattgatcgaaatggccaatggc
ctggagatcgaaaacgccaatcgcctgcgcaagcaggaattgatgttcgcgattcttaaa
aagcgcgccaagaccggcgacacgattttcggcgacggcacgctcgaagtattgccggac
ggcttcggcttcctccgctcacccgagacttcatacctcgccagcacggacgatatctac
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgacaccatcgaaggcgaa
gtgcgcaccccgaaagacggcgagcgttatttcgcgctggtcaaggtggacaaggtcaac
ggccaggcgccggaagcctcgaagcacaagatcatgttcgagaacctgacgccgctgcac
ccgaacaagccgctgccgctcgagcgcgaaatgcgcggagaggaaaacgtgacgggccgg
atcatcgacatgatctcgcctatcggcaaggggcagcgcgggttgctggtggcatcgccg
aaatcgggcaagaccgtgatgctgcagcacattgcgcacgccatcaaatcgaaccacccg
gatatcgtgctgttcgtgctgctgattgacgaacgcccggaagaagtgacggaaatgcag
cgctcggtggtcggcgaagtaatcgcctccaccttcgacgaacccgccgcgcgccacgtg
caagtcgcggaaatggtgatcgaaaaggccaagcgcctggtcgaaatgaagcacgacgtg
gtcatcctgctcgactccatcacgcgtctcgcgcgcgcctacaacacggtcgtgccggct
tcgggcaaggtgctgaccggtggtgtggatgccaacgcgctgcaacgtccgaagcggttc
ttcggcgcggcgcgcaatatcgaggaaggcggatcgctgaccatcatcggtacggcactg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcatctggaacgccgtcttgctgaaaagcgggtttatccgtcgatcaacctg
aacaagtcgggcacgcgccgcgaagaactgctcatcaagcctgacctgctccaaaaggtc
tgggtgctgcgtaagttcattcacgacatggacgaagtcgaatccatggaattcctgctc
gacaagatccgccagaccaagaacaacgctgaattcttcgatctgatgcgccgcggcggt
agttga

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