Burkholderia sp. PAMC 28687: AX768_10855
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Entry
AX768_10855 CDS
T05699
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bui
Burkholderia sp. PAMC 28687
Pathway
bui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AX768_10855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bui03019
]
AX768_10855
03009 Ribosome biogenesis [BR:
bui03009
]
AX768_10855
Enzymes [BR:
bui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AX768_10855
Messenger RNA biogenesis [BR:
bui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AX768_10855
Ribosome biogenesis [BR:
bui03009
]
Prokaryotic type
rRNA processing factors
AX768_10855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMM14524
LinkDB
All DBs
Position
1:2335329..2338691
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AA seq
1120 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLDLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAVEAASQSGVAGKPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ASAFMDIVMPDNLSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARSTKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLIPNKHLET
PHYKLERLRHDDTRLDEPRASWKMAEEAAHELESETGYSKRTEEVKPKQEAMVKGITPAS
PAPSAPVKVAAAPVAAPAPVAASTGGFIGWLKNLFGVQPEVKPAPVPVVTPAPVRPARGD
RPERSGQGGDRNRNRRGGTGSRDSAAAVAGTAAATPGTAGGRQNPRREEREPKEAREPRE
PREGREGREPREPREPRGGREGREPREAREGREPREQREPREPRESRDNRERTEAADRGE
RRDRGDRPERGERKKPQPEAAVEALTQGETVVSELTENTQAGQESQQNGNADALQADQAS
AAREGEERRRRRRGRRGGRRDREEEGVTVNQAADIAEGEGTAESTDPERAQAGVFDTDGD
DTREFAPAVAKPAQATPAAVTVEPVAAAAVAVTELPEPVRAVPVETVAPVSIPAAQPVAE
SIEAKHAEAEGFVVQHEAHEVHTPHAETPAINVFEKPAAPRPVENPFGPTPKVAEEKPAS
PFIDTPKAEEPVVAQAAPEAAPQAAETLAQPAEPLKTAAVAAAPESEMVSAIAPPAPVVA
EASAPVVSEPVKAFEAVETAAPAPVAPAPAVAPVALKEEALKPMLDTAGLVWVNTDADKL
RAAREAADQVEAPKRVVRERKRLPPLDAAPMQQVETGKDA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcagcaagaagaattgcgcgtcgctatcgtcgat
gggcaaaaactcatcgacatcgacattgaaaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggagtcgtcacccgcatcgagccgtcgctcgaagcctgttttgtgaactac
ggcgaagaccgccatggtttcctgccgttcaaggaagttgcccgccagtacttcaaggac
ggcgtggacatgcgctccgcgcgcatccaggacgcgctgcgcgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatttcg
ctcgccggacgttaccttgtcctgatgccgaacaacccgcgtggcggtggtgtatcgcgc
cggatcgagggcgacgaacgccaggaattgcgcgaaacgatggcccagctcgacttgccg
gaaggcatgagcatcatcgcgcgtacggcagggatcggccgctcggctgaagaactgcag
tgggatttgaactacctgatgcaattgtggcgcgcggtggaagcggcgtcgcaaagcggc
gtagccggcaagccgatgctgatttatctcgaatccagcctcgtgatccgcgcgatccgc
gattacttccagccggatatcggcgaaatcctgatcgataccaccgagatccatgatcag
gccagcgccttcatggacatcgtgatgccggataacttgagcaaagttaaacgctatcac
gacgacgtacccctcttctcccgtttccagatcgaacaccagatcgagaccgcgtattcg
cgcacggtgccgttgccttcgggcggcgcgatcgtgatcgaccacacggaagcgctggtt
gccatcgacgtgaactcggcccgctcgaccaagggcgccgacatcgaggaaacggcgaca
cgcacgaacctcgaagctgccgacgaagtcgcgcgccagttgcgcctgcgcgatctgggc
ggcttgatcgtgatcgactttatcgatatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgttgaagcacgatcgtgcgcgcgtacaaatgggcaagatttcc
cgcttcggcttgatggaactgtcgcgtcagcgcctgcgtccggcgttgtccgaaggcagc
catgtgacctgccctcgttgtaacggcaccggccatatccgtgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcaatgaaggaaaacaccgcggcaattcat
tgccaggtgccggtggaagtcaccgctttcctgctgaacgaaaagcgttcggaaatcaac
aagatcgagtcgcgtttcaaggtcaacgtcgtgttgatcccgaacaagcatctcgaaacg
ccgcactacaagctggaacgcctgcgtcacgacgatacacgtctggacgagccgcgtgca
tcgtggaagatggccgaggaagccgcgcacgaactggaatccgaaacgggttacagcaag
cgcaccgaggaagtgaagcccaagcaggaagcgatggtcaagggcatcacgccagcttct
cccgcgcctagcgcgccggtgaaggtcgcggcggctccggtcgcggcacccgcgccggtg
gcggcatcgactggcgggttcatcggctggttgaagaacctgtttggcgtgcagccggaa
gtgaagccggcgccggtgccagtcgtcacgcccgcgccggtacgtccggcccgcggcgat
cggccggaacggtcgggacaagggggtgaccggaaccgcaatcgccggggtggcaccgga
tcgcgtgacagcgcagcggctgttgcaggtacggcagcagccacgccaggtacggcgggc
ggccgtcaaaacccgcgccgcgaggaacgggaaccgaaggaagcacgcgaaccgcgtgaa
ccacgtgaaggccgtgagggtcgcgaaccgcgcgagccaagggaaccgcgtggtggccgt
gaaggccgcgagccgcgtgaggcacgcgaaggccgcgagccgcgcgaacagcgtgagcca
cgcgagccgcgcgaatcgcgtgacaaccgcgaacgtacggaagccgccgatcgaggtgag
cgtcgtgaccgtggcgatcgtccggagcgcggtgaacgcaagaagcctcagccggaagct
gctgtcgaagcattgacgcaaggcgaaacggtcgtgtcggagttgacggaaaacacgcaa
gcaggccaggaatcccagcaaaacggcaacgccgacgcattgcaggccgatcaggcgagc
gcagcgcgtgaaggtgaagagcgccgccgtcgccgtcgtggccgtcgtggtggacgccgc
gatcgtgaagaagaaggcgtgacggtgaatcaggctgcggatatcgcggaaggcgaaggt
acggctgaaagtaccgatccggaacgcgctcaagccggcgtattcgataccgatggcgac
gacacgcgcgagttcgcgcctgccgtagccaaaccggctcaagcaaccccggcggctgta
acggtcgagccggttgccgctgccgcggtcgccgtgacggaattgccggagccggttcgc
gccgtgccggtcgaaacggtcgcgccggtttccatccctgccgcgcagccagttgcagaa
tcgatcgaagcgaagcacgccgaagccgaagggttcgtggtgcagcacgaggcgcatgaa
gttcacacgccgcatgctgaaacgccggcgatcaacgtgttcgagaagccggcagcaccg
cggcccgtcgaaaacccgtttggtccgacgccgaaggtagcggaagaaaagccggcgagt
cctttcatcgataccccgaaggcagaggaaccggtcgtagctcaggccgcgcccgaagca
gcaccgcaagccgctgaaacgcttgcccagcctgccgagccgctgaaaacggcggctgtt
gcggcagcgccggaatcggaaatggtatcggcgattgcgccgcctgcgcccgtggtggcg
gaagcgtctgcaccggtcgtatccgagccggtgaaggctttcgaagctgtggaaacggct
gcgcccgccccggttgctccggcgcccgcggttgccccggtcgcgctgaaggaagaagcc
ctcaagccgatgctggatacggcgggtctcgtctgggtgaacaccgacgccgacaagctc
cgcgctgcgcgcgaagccgcggatcaggtcgaagcgccgaaacgcgtcgtgcgggagcgc
aagcgcctgccgccgctcgacgccgcgccgatgcagcaagtggaaacgggtaaggacgca
taa
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